PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884411.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 624aa MW: 71286.6 Da PI: 6.3362

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.9	4.3e-31	432	516	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +e ++++ k+plWe+vs+ m++ g++rs+k+Ckekwen+nk+++k k++ kkr s++s+tc+yfdql+ XP_015884411.1 432 RWPKSEVEALIRVRSGVEVKFQEPGPKGPLWEAVSALMASMGYQRSAKRCKEKWENINKYFRKSKDSGKKR-SQQSKTCSYFDQLD 516 8*******************************************************************8.78889******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	9.34E-27	431	496	No hit	No description
PROSITE profile	PS50090	6.737	431	489	IPR017877	Myb-like domain
Pfam	PF13837	6.4E-21	431	518	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MQSDYEIAGI VPHQQFMDTD CCSSVFPLLT PPIPNHHDPL HHHQHHPQLH HHSQQQQKQQ 60 QHYHMNHNHP VHPVPPITHQ FFQQQRLPFQ ALQHQQQQEE QQQGGRLHHH HQQQQLRLEQ 120 EPGQSPNNFF PVNFKLGLNE NSRRQECALN GELFHGNELH ASESTRPYSS GFLPKCWQTQ 180 EYSATREPFW NPLGTDISNT NKKHSQVDVR ERCKELESKY RLYGELEAIY SLAKIGETNQ 240 TGSGSALTGE NSPATVDLAV PLGDPHGHND GATVAVGVDN GSEASIGEET TTVRKVHKTR 300 KTKRKLKEQL NSMTEFLESL VKQVMSHQES LHKRFLEVLE KIDKERREKE EAWRREEAEK 360 HNREVIARVR EQALASRREA VIVSYMEKIT GQRINLPSRR TTPLLFQQPE ISTEEPAREV 420 AQPNIKIDTN SRWPKSEVEA LIRVRSGVEV KFQEPGPKGP LWEAVSALMA SMGYQRSAKR 480 CKEKWENINK YFRKSKDSGK KRSQQSKTCS YFDQLDQLYT RTPNNDPSSS SVSSGFEVQR 540 QSYTELLEAF TAGGDDGIAQ TLSGGNFDVS EMGSSKFRFN GIVDDKLGFE GEEHGTTENE 600 NHDDDDNEDV EGVEEKEDGV DEGD

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MQSDYEIAGI VPHQQFMDTD CCSSVFPLLT PPIPNHHDPL HHHQHHPQLH HHSQQQQKQQ  60
QHYHMNHNHP VHPVPPITHQ FFQQQRLPFQ ALQHQQQQEE QQQGGRLHHH HQQQQLRLEQ  120
EPGQSPNNFF PVNFKLGLNE NSRRQECALN GELFHGNELH ASESTRPYSS GFLPKCWQTQ  180
EYSATREPFW NPLGTDISNT NKKHSQVDVR ERCKELESKY RLYGELEAIY SLAKIGETNQ  240
TGSGSALTGE NSPATVDLAV PLGDPHGHND GATVAVGVDN GSEASIGEET TTVRKVHKTR  300
KTKRKLKEQL NSMTEFLESL VKQVMSHQES LHKRFLEVLE KIDKERREKE EAWRREEAEK  360
HNREVIARVR EQALASRREA VIVSYMEKIT GQRINLPSRR TTPLLFQQPE ISTEEPAREV  420
AQPNIKIDTN SRWPKSEVEA LIRVRSGVEV KFQEPGPKGP LWEAVSALMA SMGYQRSAKR  480
CKEKWENINK YFRKSKDSGK KRSQQSKTCS YFDQLDQLYT RTPNNDPSSS SVSSGFEVQR  540
QSYTELLEAF TAGGDDGIAQ TLSGGNFDVS EMGSSKFRFN GIVDDKLGFE GEEHGTTENE  600
NHDDDDNEDV EGVEEKEDGV DEGD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884411.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884410.1	0.0	trihelix transcription factor GTL2-like
Refseq	XP_015884411.1	0.0	trihelix transcription factor GTL2-like
Refseq	XP_024930915.1	0.0	trihelix transcription factor GTL2-like
TrEMBL	M5XHC8	0.0	M5XHC8_PRUPE; Uncharacterized protein
STRING	EMJ25364	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	8e-43	Trihelix family protein