PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015884384.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 497aa MW: 54384.2 Da PI: 9.0047 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_015884384.1 102 FICEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + ks+ k H + + XP_015884384.1 179 WKCEKCSKIYAVKSDWKAHSKIC 201 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 101 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.74E-7 | 101 | 124 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.9E-5 | 102 | 124 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 144 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 167 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.74E-7 | 174 | 199 | No hit | No description |
SMART | SM00355 | 150 | 179 | 199 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MNTHNLPHHH PQREEMMMMK GLMVEHDNMS NLTSASAEIS ASSSIRNEAA GGSNLNYNQY 60 SSASTNQLPP PPKRKRNLPG NPDPDAEVIA LSPTTLLATN RFICEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRTNKEVIR KKVYVCPEST CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK 180 CEKCSKIYAV KSDWKAHSKI CGTREYRCDC GTIFSRRDSF ITHRAFCDAL AQEESGRGIT 240 PIINHHPLLI SSQPRLPIHG LQASSSSLPV KREQEFVPWL TPNLSLPPPP LLFSSSSSST 300 SSLERSFIHH QNPNPSSTTR LVPPIATATA SPHTSATALL QRATKMGAAT MSKASTFLPP 360 HQPAAAISGI MEEGWFGNIK AAPNPNSPSL LHDMMSSLSS EAGLAAPASS YSYGDASNTA 420 GSFVEIPPSN TASETQLQTS IGVGGGDGGN EGLTRDFLGL RAFPQRDFFD MVGLHHINNS 480 SSAYGEPQNH NQSQWHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-32 | 175 | 233 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 8e-32 | 175 | 233 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 141 | KLKQRTNKEVIRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015884384.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884383.1 | 0.0 | protein indeterminate-domain 12-like | ||||
Refseq | XP_015884384.1 | 0.0 | protein indeterminate-domain 12-like | ||||
TrEMBL | A0A2C9W4K3 | 1e-164 | A0A2C9W4K3_MANES; Uncharacterized protein | ||||
STRING | EOY29917 | 1e-164 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-101 | C2H2-like zinc finger protein |