PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884383.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 497aa    MW: 54384.2 Da    PI: 9.0047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_015884383.1 102 FICEICNKGFQRDQNLQLHRRGH 124
                     89*******************88 PP
2zf-C2H210.90.0015179201123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  ks+ k H + +
  XP_015884383.1 179 WKCEKCSKIYAVKSDWKAHSKIC 201
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-7101124No hitNo description
PROSITE profilePS5015710.845102124IPR007087Zinc finger, C2H2
SMARTSM003550.022102124IPR015880Zinc finger, C2H2-like
PfamPF121715.9E-5102124IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355220144174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-4167200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-7174199No hitNo description
SMARTSM00355150179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MNTHNLPHHH PQREEMMMMK GLMVEHDNMS NLTSASAEIS ASSSIRNEAA GGSNLNYNQY  60
SSASTNQLPP PPKRKRNLPG NPDPDAEVIA LSPTTLLATN RFICEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRTNKEVIR KKVYVCPEST CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK  180
CEKCSKIYAV KSDWKAHSKI CGTREYRCDC GTIFSRRDSF ITHRAFCDAL AQEESGRGIT  240
PIINHHPLLI SSQPRLPIHG LQASSSSLPV KREQEFVPWL TPNLSLPPPP LLFSSSSSST  300
SSLERSFIHH QNPNPSSTTR LVPPIATATA SPHTSATALL QRATKMGAAT MSKASTFLPP  360
HQPAAAISGI MEEGWFGNIK AAPNPNSPSL LHDMMSSLSS EAGLAAPASS YSYGDASNTA  420
GSFVEIPPSN TASETQLQTS IGVGGGDGGN EGLTRDFLGL RAFPQRDFFD MVGLHHINNS  480
SSAYGEPQNH NQSQWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-32175233361Zinc finger protein JACKDAW
5b3h_F8e-32175233361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141KLKQRTNKEVIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884383.10.0protein indeterminate-domain 12-like
RefseqXP_015884384.10.0protein indeterminate-domain 12-like
TrEMBLA0A2C9W4K31e-164A0A2C9W4K3_MANES; Uncharacterized protein
STRINGEOY299171e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-101C2H2-like zinc finger protein