PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884112.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 434aa    MW: 48112.3 Da    PI: 6.6056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53211481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+
  XP_015884112.1  21 LPPGFRFHPTDEELITFYLASKVYNGTFCG-VDIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 114
                     79*************************877.34***************8888899**************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  XP_015884112.1 115 sSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 148
                     78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6317170IPR003441NAC domain
PROSITE profilePS5100559.62121170IPR003441NAC domain
PfamPF023651.6E-2722148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLSIEEVLCE LSGGDVNEQG LPPGFRFHPT DEELITFYLA SKVYNGTFCG VDIAEVDLNR  60
CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL  120
GMKKTLVFYK GRAPRGQKTK WVMHEYRLDG HFSCRHTCKE EWVICRIYHK TTEKKNPLFQ  180
GRQSYLMELE GVGVSSATAS TGCLPPLMES SSSQTTLLEY QNENAMQGLQ NHPFVIPHQE  240
NDLKRLMISP GVSQPHLFPM NGFQPDSSSP TTNKNSNINS NPLPSSMLFK SLLSHQDCTL  300
KERAAAGASS TSSSTIPKQK QCKTECNFSL HDGSLQLLMD KNDQPNPYHD RDHDHQCQDP  360
LALFDMDYSA LLAAGGVGGV GGFTFSSSSA PPTAAAPDAA ALAHMSTSLP FNFQPLLHIP  420
PTKLLPEDSW PLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-511617212167NO APICAL MERISTEM PROTEIN
1ut4_B7e-511617212167NO APICAL MERISTEM PROTEIN
1ut7_A7e-511617212167NO APICAL MERISTEM PROTEIN
1ut7_B7e-511617212167NO APICAL MERISTEM PROTEIN
3swm_A9e-511617215170NAC domain-containing protein 19
3swm_B9e-511617215170NAC domain-containing protein 19
3swm_C9e-511617215170NAC domain-containing protein 19
3swm_D9e-511617215170NAC domain-containing protein 19
3swp_A9e-511617215170NAC domain-containing protein 19
3swp_B9e-511617215170NAC domain-containing protein 19
3swp_C9e-511617215170NAC domain-containing protein 19
3swp_D9e-511617215170NAC domain-containing protein 19
3ulx_A7e-511817312171Stress-induced transcription factor NAC1
4dul_A7e-511617212167NAC domain-containing protein 19
4dul_B7e-511617212167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884112.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884112.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-102NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2N9EJM81e-164A0A2N9EJM8_FAGSY; Uncharacterized protein
STRINGPOPTR_0002s00730.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-103NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]