PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015883450.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 316aa MW: 35672.2 Da PI: 10.3169

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015883450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.9	2.9e-34	2	76	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfy+grapkgekt+Wvmheyrle XP_015883450.1 2 GEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GRSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 76 578************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.904	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-39	2	100	IPR003441	NAC domain
Pfam	PF02365	3.5E-16	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGEKEWYFFC VRDRKYPTGL RTNRATEAGY WKATGKDKEI YRGRSLVGMK KTLVFYRGRA 60 PKGEKTNWVM HEYRLEGKFS VHNLPKTAKN EWVICRVFQK SSGGKKTPLS GLVRLGNFGN 120 EIGSSGLPPL MDSSTYSAKS KQAPQSSNVP CFSNPPIMDV RRNQEGFVDS INNNNNTLFS 180 VSSNPSTNIF PRIPLSDSIY PTQTVPISGN QPQFQSSVLM QDQSILRALL ENQSSNLRQT 240 FKAEREMVSN FSQETVLSSQ MNNEISSVMS NLEMGIRRPF GDHQEQQQQQ HPPVSGPPID 300 LDSFWRRKSS GKSSPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	1	106	68	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-32	1	106	71	174	NAC domain-containing protein 19
3swm_B	3e-32	1	106	71	174	NAC domain-containing protein 19
3swm_C	3e-32	1	106	71	174	NAC domain-containing protein 19
3swm_D	3e-32	1	106	71	174	NAC domain-containing protein 19
3swp_A	3e-32	1	106	71	174	NAC domain-containing protein 19
3swp_B	3e-32	1	106	71	174	NAC domain-containing protein 19
3swp_C	3e-32	1	106	71	174	NAC domain-containing protein 19
3swp_D	3e-32	1	106	71	174	NAC domain-containing protein 19
4dul_A	2e-32	1	106	68	171	NAC domain-containing protein 19
4dul_B	2e-32	1	106	68	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015883450.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015883450.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0M3R852	1e-154	A0A0M3R852_MANES; NAC transcription factors 17
STRING	cassava4.1_010528m	1e-155	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-109	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]