PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883145.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 330aa    MW: 37122.4 Da    PI: 4.5551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.33.8e-2921532984200
            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     f    P+ +++++   qaIle v++++++HiiD++i++G+QW+ L+qaL+sR+e p   l+i +vg    + k+  e +g+rL +fA+ l++pf+
  XP_015883145.1 215 FLRGIPFCQLAQFSGTQAILENVSEAKKIHIIDLGIKNGMQWIVLMQALTSRKECPLeLLKISAVGT---TCKHLNEDIGKRLLSFAQILNLPFS 306
                     88889***********************************************96655499*******...58888999***************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgE 200
                     f++++++++  l+ + ++++ +E
  XP_015883145.1 307 FKIVMVTNMVYLKEDLFELDVDE 329
                     ****9999999977766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.665102330IPR005202Transcription factor GRAS
PfamPF035141.3E-26215329IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQREGKEREV ESRKDWKVGS EEVKRIRRTE TEENVGEAGG VESEMGNMIA RKLCMLNLRT  60
QTKSFRFGGM EDIVFSFEQF SYDGAQDKLG STDKERIVEP NNDAAACIEM ENQGLSTEEI  120
IRIAGARIIQ YTSQAAEVPS MPSHPFELSF LGLSHEEIND VELVELLLAS DEKVGSLRER  180
IDRETGRFAL NGLGDKVAFD IDEAMMTLNP TNLAFLRGIP FCQLAQFSGT QAILENVSEA  240
KKIHIIDLGI KNGMQWIVLM QALTSRKECP LELLKISAVG TTCKHLNEDI GKRLLSFAQI  300
LNLPFSFKIV MVTNMVYLKE DLFELDVDET
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902714.11e-131DELLA protein RGL1-like
TrEMBLA0A2I4DWN45e-85A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
STRINGEMJ259712e-84(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-18RGA-like 2