PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015882939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 357aa MW: 40554.6 Da PI: 8.8128 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.8 | 2.1e-16 | 34 | 135 | 2 | 80 |
trihelix 2 WtkqevlaLiearr.......................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e++ Liea++ +++++r+gk ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k + XP_015882939.1 34 WTVSETMILIEAKKmdderrlmkrisssssnngdqntHDQSSSRSGKPAELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVRDYERKLVD 128 **************999998888888888888888766666666778*********************************************999 PP trihelix 74 essstcp 80 e ss + XP_015882939.1 129 EGSSYWN 135 9998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.481 | 26 | 113 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.2E-11 | 33 | 125 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MRLYFCMHIY MFDVFDRVVT VIYSVMRDYR KGNWTVSETM ILIEAKKMDD ERRLMKRISS 60 SSSNNGDQNT HDQSSSRSGK PAELRWKWVE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR 120 DYERKLVDEG SSYWNIEKNE RKERNLPTNM LPQIYEALVE VVEKKAQQRV NVMALTATTT 180 TTGGGGTTSS VIVVPSSSPS PNVLSYVHHH QLSLPTPIPS PLMPPPLMLQ HHHISAPPSM 240 AAAAAALPLP SPHIAAAPIL PASQTQQPLS LPYSHPLPTV VQILIQVSLQ SHQQKGGEEG 300 VEVEVEREQA LALLVQQQPQ QQVMINKWGV LSPEVLPSLL KHLKPVRREK IEGTEMF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015882939.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882939.1 | 0.0 | uncharacterized protein LOC107418735 isoform X4 | ||||
TrEMBL | F6HIS4 | 8e-74 | F6HIS4_VITVI; Uncharacterized protein | ||||
TrEMBL | W9R7D1 | 2e-73 | W9R7D1_9ROSA; Uncharacterized protein | ||||
STRING | VIT_10s0042g00940.t01 | 1e-74 | (Vitis vinifera) | ||||
STRING | XP_010098471.1 | 4e-74 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-56 | Trihelix family protein |