PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882351.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 278aa    MW: 30843.7 Da    PI: 4.1775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.1e-148451350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    f++R+ ++ KKA EL  LC+aev+vi +  +g l +++
  XP_015882351.1  8 FANRKSTLKKKAAELAALCGAEVCVICLDANGYLETWP 45
                    99***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-12771IPR002100Transcription factor, MADS-box
PfamPF003191.9E-11844IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.638848IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGFPKNKFAN RKSTLKKKAA ELAALCGAEV CVICLDANGY LETWPEDVNK VKATILKYNH  60
TVQATKKKAK TKVKAAADEK NSFNPCSNGI MWDGNLENLS KESFMSLSNC LEAKIQTLDY  120
QIDQAHDDDN QLTCVGPIYG FDEIDMNNPD LMTNNCCNNM VMVDQFDQLQ HSIPLAIDLP  180
PLPVEFSDNN ATTMAASHSL SNCNHIIDDV VGNTVGIIDY DDGDQYWNNL LGADLETTDS  240
DLGSEFNFLM QEYSKEISCS NFPAEDNFCL PMNQICGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882351.10.0agamous-like MADS-box protein AGL103
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1547579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-08AGAMOUS-like 103