PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882282.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 264aa MW: 30714.2 Da PI: 9.0465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	98	121	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H+ + H XP_015882282.1 98 WQCGYCKKSFRAEKFLDQHMDNrH 121 58******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.787	98	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MVENYIVFSF ASGFSSLLRF DYEGSAASRT LKQEQEHAHQ VHCSRERSRA AWKIIEEYLM 60 PFVEREHYSI SSKCRLHPDN DLFRDQEEHK IHFDINEWQC GYCKKSFRAE KFLDQHMDNR 120 HHNLLNVNGS KCLADLCGAL HCDHVMKTKS TKAKCNPAAV ARNHHLCESL ADSCFPIHQG 180 PSASRLHELF LRQFCDAHSC SRKQKPFSRG GKKQTSVLYL AVSILTMMLL PLFYLLVYLH 240 QRDMRMRTQE LRRIPQSGRK AKGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882282.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882282.1	0.0	uncharacterized protein LOC107418119
TrEMBL	A0A2P5EIA7	1e-156	A0A2P5EIA7_TREOI; Zinc finger, C2H
STRING	XP_010101931.1	1e-147	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-114	C2H2-like zinc finger protein