PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015882278.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 541aa MW: 60373.1 Da PI: 6.7373

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015882278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.7	4.2e-110	164	540	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkf 93 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++La rla + + + + + + ++ s+++ al+l +e++P +kf XP_015882278.1 164 LVQLLIACAEAVACRDKSHASLLLSELRSNALVFGSSFQRVASCFVQGLADRLAMVNPLGAVGFVSPAMNLMDvgSAKKEEALRLVYEICPHIKF 258 689*************************************************844443444455555545567999999********** PP GRAS 94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +h++aN+aIlea+ege+ vH++D++++ G QW Llq+La+R+ ++p ++RiT+vg ++ + +g+ L+ +A++lg+++ef XP_015882278.1 259 GHFVANSAILEAFEGESYVHVVDLGMTlalpLGHQWRELLQSLANRSgsggqqQPPRRIRITAVGL----CVDRFRIIGDELEAYANSLGMNLEF 349 *********************983333599*********8776644466*****....*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +v v+++le+l++++++ +gE+l+Vn++lqlh +++es + +vL++v +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a XP_015882278.1 350 SV-VESNLENLQPKDIKRFEGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDA 440 9.7*****************************88877777...8******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367 lp+ + r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+ p++ ++ak l+++k +g+++ ee+g+lvlgWk++p+ XP_015882278.1 441 MLPKYDTRRAKIEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQGSPIKM--IAEAKQWLENIKaCEGFTIVEEKGCLVLGWKSKPI 533 ***************************************************986..55799999999999***************** PP GRAS 368 vsvSaWr 374 +++S+W+ XP_015882278.1 534 IAASCWK 540 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.693	138	521	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-107	164	540	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MAPRHNMLSK IQFFEQGMAE SLSNLDLSLS AMAYYPYPYM PILEENDSTM ILPFCDEIQN 60 HKRHKRVMSM AESISSNSNS SFYSRGSSGG SNGSSNMSIS SCNMCRSNST SSLNSLPRLQ 120 FRDHIWTYTQ RYLAAEAVEE AAAAMINREE SGTEDRGGTD GMRLVQLLIA CAEAVACRDK 180 SHASLLLSEL RSNALVFGSS FQRVASCFVQ GLADRLAMVN PLGAVGFVSP AMNLMDVGSA 240 KKEEALRLVY EICPHIKFGH FVANSAILEA FEGESYVHVV DLGMTLALPL GHQWRELLQS 300 LANRSGSGGQ QQPPRRIRIT AVGLCVDRFR IIGDELEAYA NSLGMNLEFS VVESNLENLQ 360 PKDIKRFEGE VLVVNSILQL HCVVKESRGA LNSVLQMVHE LSPKVLVLVE QDSSHNGPFF 420 LGRFMEALHY YSAIFDSLDA MLPKYDTRRA KIEQFYFAEE IKNIISCEGP ARVERHERVD 480 QWRRRMSRAG FQGSPIKMIA EAKQWLENIK ACEGFTIVEE KGCLVLGWKS KPIIAASCWK 540 C

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MAPRHNMLSK IQFFEQGMAE SLSNLDLSLS AMAYYPYPYM PILEENDSTM ILPFCDEIQN  60
HKRHKRVMSM AESISSNSNS SFYSRGSSGG SNGSSNMSIS SCNMCRSNST SSLNSLPRLQ  120
FRDHIWTYTQ RYLAAEAVEE AAAAMINREE SGTEDRGGTD GMRLVQLLIA CAEAVACRDK  180
SHASLLLSEL RSNALVFGSS FQRVASCFVQ GLADRLAMVN PLGAVGFVSP AMNLMDVGSA  240
KKEEALRLVY EICPHIKFGH FVANSAILEA FEGESYVHVV DLGMTLALPL GHQWRELLQS  300
LANRSGSGGQ QQPPRRIRIT AVGLCVDRFR IIGDELEAYA NSLGMNLEFS VVESNLENLQ  360
PKDIKRFEGE VLVVNSILQL HCVVKESRGA LNSVLQMVHE LSPKVLVLVE QDSSHNGPFF  420
LGRFMEALHY YSAIFDSLDA MLPKYDTRRA KIEQFYFAEE IKNIISCEGP ARVERHERVD  480
QWRRRMSRAG FQGSPIKMIA EAKQWLENIK ACEGFTIVEE KGCLVLGWKS KPIIAASCWK  540
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-58	148	539	3	378	Protein SCARECROW
5b3h_A	1e-58	171	539	25	377	Protein SCARECROW
5b3h_D	1e-58	171	539	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015882278.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882278.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A192ADG0	0.0	A0A192ADG0_PYRPY; DELLA protein RGL2
STRING	XP_009359535.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-72	GRAS family protein