PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882267.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 358aa    MW: 40468.3 Da    PI: 7.5972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09179226455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_015882267.1 179 SHSLAERVRREKISERMKMLQKLVPGC----DKVTGKALMLDEIINYVQSLQ 226
                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17173242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-9173230No hitNo description
Gene3DG3DSA:4.10.280.103.3E-17175241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAAFSYSHHP FLLDSVLLPN TPIKMSGFMD ETNLNTNFFS QFYPSQHFQE IPLDVRLEET  60
SCLDHSSRIA LSDNEPSMTK KHSTESSFVV DKLESGEQVT QEVPTMDKKR KNRNGSSLSS  120
AQSKDARENK GKRQKKSNDA KKDEEKKLKC DKNGEAKSRE EPSRDYIHVR ARRGQATDSH  180
SLAERVRREK ISERMKMLQK LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN  240
PMFYDFGMDL DSFMVRPERL SSMASPVQSI PQCSPTQQQT TAFADTATTT TSNNNNNTNF  300
TTATNFPHVG NSAPLLLPQE QRPNAFSHVN GSLLWEVEDQ RQNFLSPSGF SNNMCTFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408783e-83EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882267.10.0transcription factor bHLH137 isoform X1
TrEMBLA0A2I4FLK31e-157A0A2I4FLK3_JUGRE; transcription factor bHLH137-like isoform X1
STRINGEMJ104831e-157(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-60bHLH family protein