PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015882119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 38032.5 Da PI: 8.2984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 3.9e-51 | 24 | 152 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 pGfrFhPtd+elv +yL++kve+k++++ e ik +diyk+ePwdLp +++++++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s++ XP_015882119.1 24 PGFRFHPTDDELVGFYLRRKVEKKPISI-ELIKAIDIYKYEPWDLPkATTNSGDKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVHSQG 117 9***************************.89***************557788999**************************************94 PP NAM 97 gel...vglkktLvfykgrapkgektdWvmheyrl 128 ge +glkktLv+y+g+a kg+ktdW+mhe+rl XP_015882119.1 118 GEGyrcIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 152 443555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.283 | 22 | 184 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-54 | 23 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-26 | 24 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGTYNNNNNK NQEEHEDVDE TPLPGFRFHP TDDELVGFYL RRKVEKKPIS IELIKAIDIY 60 KYEPWDLPKA TTNSGDKEWY FFCKRGRKYK NSIRPNRVTG SGFWKATGID KPVHSQGGEG 120 YRCIGLKKTL VYYRGSAGKG TKTDWMMHEF RLPTGLDANT NRPNAKTADP QEAEIWTLCR 180 IFKRNMSYRK YTPDWRELSA KRQPMDALIT SKKCNMNDDQ YSNRNNGESY IDFSAPIIYH 240 EDKKPVILNH HHHHINVGNG ITNNNNNQLH VGQALSSSMA ATQYHHPSYL NSLSSFSSYE 300 DIENELFMHA DWDELRSAVD QFVVGPTLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 15 | 190 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 15 | 190 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 15 | 190 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 15 | 190 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 15 | 190 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 15 | 190 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015882119.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882119.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P5DV65 | 1e-137 | A0A2P5DV65_PARAD; NAC domain containing protein | ||||
STRING | EMJ15590 | 1e-131 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-86 | NAC domain containing protein 42 |