PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015881992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 226aa MW: 25214.9 Da PI: 9.889 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.2 | 6.9e-24 | 125 | 165 | 1 | 41 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 daep+rCrRtDGKkWRCs+++l+++k+CErH+hrgr+rsr+ XP_015881992.1 125 DAEPWRCRRTDGKKWRCSKEALPDQKYCERHVHRGRHRSRS 165 79*************************************97 PP | |||||||
2 | QLQ | 46.8 | 8.9e-17 | 54 | 90 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 saFT Qlq+L Q l+yKy+ a++PvP +L+++i+k XP_015881992.1 54 SAFTFLQLQELQLQSLIYKYMEAGLPVPYHLVLPIWK 90 79*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.6E-5 | 54 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.394 | 55 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-12 | 55 | 89 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.918 | 125 | 169 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-20 | 126 | 165 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEFQNRASNF AILSDPWNMN TNGLAQEERS KPPVGLNLEL GCGSNPKRDS IKCSAFTFLQ 60 LQELQLQSLI YKYMEAGLPV PYHLVLPIWK SCSGSLGILN GGMPPNHPCC LGISPLYLDS 120 KKAMDAEPWR CRRTDGKKWR CSKEALPDQK YCERHVHRGR HRSRSVSQRT TPNTATAGGV 180 FGSNTNISIA LPLSRPNTTN TILFPRLGFI TKGVNHADTR KTEPFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015881992.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015881992.1 | 1e-170 | growth-regulating factor 10-like isoform X1 | ||||
Swissprot | Q6AWX7 | 2e-38 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2P5CSQ9 | 5e-70 | A0A2P5CSQ9_TREOI; Growth-regulating factor | ||||
STRING | VIT_02s0025g04910.t01 | 6e-66 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-18 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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