PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881783.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 403aa    MW: 45204.3 Da    PI: 7.3451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffa  G C  G+rC F+H+
  XP_015881783.1  3 KRVLCKFFAH-GACLKGERCEFSHD 26
                    99****6666.*************5 PP
2zf-CCCH22.52e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G C yG+rC++ H+
  XP_015881783.1 34 VCTFYLK-GVCAYGSRCRYEHV 54
                    6******.***********997 PP
3zf-CCCH19.61.6e-06143165326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  XP_015881783.1 143 RPICS-FAAAGNCPRGENCPHIHG 165
                     79999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981128IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4328IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0092956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-43453IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404140167IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-4141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.72E-14198273No hitNo description
Gene3DG3DSA:3.30.40.104.9E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.22E-4208268No hitNo description
SMARTSM001842.2E-7209266IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.371209267IPR001841Zinc finger, RING-type
PfamPF000973.7E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.422296325IPR000571Zinc finger, CCCH-type
SMARTSM003560.053296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGER CEFSHDWKDP SNNVCTFYLK GVCAYGSRCR YEHVKPLRSE  60
SPGSSSSTSS RQSLVSDSSP LGHHSQNLSG GVFLTPGVLT ELSALSRPFF PSKEPAWKVE  120
SEQLDFVDAG NIGGPRTSGP ADRPICSFAA AGNCPRGENC PHIHGNICPI CGKQCLHPFR  180
PEEREEHLKT CEKKQKNLEA LKHSQEIECS VCLERVLSKP TAAERKFGLL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY STKEEKQEII DNYKAKLRSI  300
DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKYQRPPPRR PTQRRSNALD MDTLFDMVAD  360
LEEMMFDSPE DLDIFCLDPV EIAYVLRQLA VSSDSSSDEE INI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881783.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-153C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2P5E7150.0A0A2P5E715_TREOI; Cdk-activating kinase assembly factor
STRINGEOX967030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-141C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]