PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881669.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 1019aa    MW: 112595 Da    PI: 6.993
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.4e-24135236199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L++gD+v+F   +++
  XP_015881669.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QEIVARDLHENVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLCAGDSVLFI--RDE 225
                     99*****************************954.4444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  XP_015881669.1 226 KQQLLLGIRRA 236
                     8889****997 PP
2Auxin_resp1201.9e-39261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++++GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_015881669.1 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQITLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                     79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-42124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-40127250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-18134226No hitNo description
SMARTSM010191.7E-23135237IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984135237IPR003340B3 DNA binding domain
PfamPF023621.9E-21135236IPR003340B3 DNA binding domain
PfamPF065071.1E-34261344IPR010525Auxin response factor
PfamPF023097.4E-7904991IPR033389AUX/IAA domain
PROSITE profilePS5174527.429906990IPR000270PB1 domain
SuperFamilySSF542771.57E-6923985No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MKTPANGAGA GSAAAAPNTC EGAEKKSINP ELWQACAGPL VNLPPAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP AKLLCLLHNV TLHADPETDE VYAQMTLQPV PSFDKEALLR  120
SDLALKSNKP QPDFFCKTLT ASDTSTHGGF SVPRRAAEKI FPSLDFSMQP PAQEIVARDL  180
HENVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLCAGDSVL FIRDEKQQLL LGIRRANRQP  240
PNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI  300
TLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPFFR SKRPRQPGMP GEKHCGYKSL IFSLSLPLNH LGSIMQPQQQ  420
LSDVSQQPRQ NMVNQTLPSS QVQAQVLQPQ TLVQTNNILQ QQPSVQSHQL QRNLSQNLQP  480
QQQPPMMSQN QQQNVIQPQL PDQINQQLQH LPDNQLQLQL LQKLQQQQQS LLAQQSSMQQ  540
PAQHTQVQEQ QRPLLDVSQS LSRPVTSSQM LELPQTTPAS LPQSNTITQQ MIKNNNSQTN  600
ARFSQTPHQQ KLHQQQTGVI PETMGNMGLT PNPTTNHLTT AGSSVMTGAA GAGQSGITDD  660
VPSCSTSPST NNCPNVVQPV INNRTHQSTL TAEDMAQSAA TILSPTALET MPSSANLVKD  720
FHQKSEVKPS LNIPRNQCQG IFTPQTYLNG TAAQTDYLDT SSSTSVCLSQ NDVNLQQNPN  780
PLSFNPQSML FREASQDGEV QADHRNNVSY GNTIDGQLGI PLNPDPLLAK GFVGLGKDFP  840
NNLSSGGVLG NYESSKDAQQ ELSSSMVSQS FGVPDMTFNS IDSTINDSSF LNRGPWPQPQ  900
QFQRMRTYTK VYKRGAVGRS IDITRYTGYD ELKQDLARRF GIEGQLEDRQ RIGWKLVFVD  960
HENDVLLVGD DPWEEFVNCV RSIRILSPQE VQQMSLDGDF GGNIVLPNQA CSSSDGGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672236545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869863.10.0auxin response factor 19-like
TrEMBLA0A2P5E7030.0A0A2P5E703_TREOI; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19