PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881459.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 468aa    MW: 51832.1 Da    PI: 5.3484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18225275256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  XP_015881459.1 225 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAALAYDREAFKLRGE 275
                     59******9.**********966...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-32224284No hitNo description
SuperFamilySSF541711.9E-22225283IPR016177DNA-binding domain
SMARTSM003807.1E-40225288IPR001471AP2/ERF domain
PROSITE profilePS5103222.813225282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-32225283IPR001471AP2/ERF domain
PfamPF008476.5E-12226275IPR001471AP2/ERF domain
PRINTSPR003671.0E-10226237IPR001471AP2/ERF domain
PRINTSPR003671.0E-10248264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAAAKNSGKS RKGVEETQKM TSWEIDRGGR NDLNFSSERR QWKPVFDEAS MSQRPLKKIR  60
SPERQDPFQS PPTSSSSSSS SSSLTRQPPS PFSVPSPSSS SSSSRIVFPF AFDGSQQQSI  120
QYPNQLSSTT FPIFRPPLLQ HPQTHQQQQQ MISFASQQQQ GMNLPAIFPA DSASPLLYNQ  180
QQLLQYWSDA LNLSPRGRMM MMNRLGPDGR PLFRPPTQPI NTTKLYRGVR QRHWGKWVAE  240
IRLPRDRTRL WLGTFDTAED AALAYDREAF KLRGENARLN FPELFLNKDK AVSEAPSSAS  300
ASSPPVPIGY QKQQAPENPN FPSDVEKMPP PPPLPAAKEE NPDEDSGVGS SEAAASDEVQ  360
ASTAGEGGGG DGGEGVSQEL VWGEMAEAWL NAIPAGWGPG SPVWDDLDTT NNFLLQSQLP  420
FHNTSSNLQQ DSNDSSNRQR QQENLDSSSC STSTFCPTKS YFWKENQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19224282160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881459.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A2I4H4441e-179A0A2I4H444_JUGRE; ethylene-responsive transcription factor ERF054-like
STRINGEOX993821e-170(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-58ERF family protein