PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881404.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 501aa    MW: 55487 Da    PI: 6.3454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296283223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cgk F++   L  H+r+H
  XP_015881404.1 62 VCQLCGKIFRSGKALGGHMRMH 83
                    6********************9 PP
2zf-C2H212.80.00035135156223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  Cgk F +   L  H+r+H
  XP_015881404.1 135 VCCVCGKNFLSMKALFGHMRSH 156
                     6********************9 PP
3zf-C2H216.52.3e-05366388123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+ksF+++  L  H ++H
  XP_015881404.1 366 YTCNICNKSFPTHQALGGHRSSH 388
                     9***************9999998 PP
4zf-C2H212.80.00036404426123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k+F++   L  H r+H
  XP_015881404.1 404 HQCKICKKMFPTGQALGGHKRSH 426
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.7E-86185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2636188IPR007087Zinc finger, C2H2
SMARTSM003550.0936183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.22E-56285No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-9134156No hitNo description
SMARTSM003550.57134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162134161IPR007087Zinc finger, C2H2
PfamPF139126.3E-5136158IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-9361388No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4364388IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-9366388IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325366393IPR007087Zinc finger, C2H2
SMARTSM003550.0055366388IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
PfamPF139123.3E-11403427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182404426IPR007087Zinc finger, C2H2
SMARTSM003550.045404426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280406426IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MELKEEATGF VSSKLKIPNP PGEEEKQQQD QEDEEEEQQD QEDEVEEQEG VVTVGAAAGT  60
RVCQLCGKIF RSGKALGGHM RMHSQYSQPA DRNRSSNRSR TTAAAAAAAT HFTANTTTTT  120
TTTTTNTSDH TTPPVCCVCG KNFLSMKALF GHMRSHPDRE WRGIQPPLPS LPPATTAAAT  180
AKTTTSSSTL SDDDQIADSA SAATAAVDCH HHRDVDLSKS LYGCSWPVST KRGRSGSIIS  240
SGKTVAKKNE AEAVSDLLML SRRGSTTIDK EDQEFNFRNR KRPDDDDDVD KGKANYKLRH  300
VGEDYFYSDS QNSESINAMG NIKDDTMNMM MMKKKRRKMK LADLEERGVM VANNANNNNT  360
DNNRSYTCNI CNKSFPTHQA LGGHRSSHNN SVNNIRKMDH HHHHQCKICK KMFPTGQALG  420
GHKRSHWYNN INNAPVEVLA DQSTSLSPGE ASQTTNRLKA VISFDLNELP PMEEEDDNND  480
NDNDDYVEQV VSTSTLTLQW E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331338MKKKRRKM
2332336KKKRR
3332337KKKRRK
4333337KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928819.10.0putative uncharacterized protein DDB_G0277255
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-14salt tolerance zinc finger