PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881129.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 537aa    MW: 58086.4 Da    PI: 7.2847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-163885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
   XP_015881129.1 38 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 85
                     79******************************************9986 PP
2Myb_DNA-binding50.26e-1691134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
   XP_015881129.1  91 KGSFSPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 134
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8693385IPR017930Myb domain
SuperFamilySSF466894.12E-3037132IPR009057Homeodomain-like
SMARTSM007171.6E-133787IPR001005SANT/Myb domain
PfamPF002494.5E-153885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-243992IPR009057Homeodomain-like
CDDcd001673.38E-114085No hitNo description
PROSITE profilePS5129426.01186140IPR017930Myb domain
SMARTSM007172.2E-1690138IPR001005SANT/Myb domain
PfamPF002495.6E-1591134IPR001005SANT/Myb domain
CDDcd001679.49E-1293134No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2593139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASEGGEGGV SAAEGVIVAA SSRGGVGGSE SGRGLLKKGP WTAAEDAILM EYVKKHGEGN  60
WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSFSPEEER IIIELHAKLG NKWARMASQL  120
PGRTDNEIKN YWNTRMKRRQ RAGLPLYPHE VQQEVAAFHL QQHHHHHHQR HPNSSPSSAS  180
FSPLLSSSTP RMPHHSSSSF PFYDHPINFS TAANPNHNHH HRSPFYSNPT TTVVEHFNSN  240
GGFAIPLSSV STAALFNHNV MNSTQMLRSD TTPPCSIQYN SGGSSTSSNN FSFSSLMEPT  300
FEPMISMVSS SMLISELPST QTMPVQSTTT PASSNTSTGC EGFMGTTSSS NGNDHYDFAP  360
PPPQPQSQGR NSGLLDALLV EAETRSQKSK AVVAESNLLA GAVDSSKGKN TAVEERRVQS  420
LLKNSGGETS TTAENQTSSS QSSIGMLKPS EDPLMEDMNS MDDDLMSLLN NFPTTMPVPD  480
WYPRSNILSH GETSSAMITG KSGVVGDVTQ NPSPTPPSPK HDRNLDACYW NNMPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32361395107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881129.20.0transcription factor MYB101
TrEMBLA0A2N9I5471e-132A0A2N9I547_FAGSY; Uncharacterized protein
STRINGXP_008230038.11e-126(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-75myb domain protein 101