PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880811.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 1843aa MW: 205679 Da PI: 9.2563

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.7	3.6e-14	12	59	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++ien+ r v f kRrng++KKA+ LS L++ ++av+++s+ g y+ XP_015880811.1 12 EKIENEQYRLVRFPKRRNGLFKKAQKLSSLTGCRIAVLVISEAGVPYT 59 57****************************************997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.5E-15	4	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.572	4	64	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-15	5	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-9	6	26	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-15	13	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-9	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-9	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1843 aa Download sequence Send to blast
MGLGKRKIIS MEKIENEQYR LVRFPKRRNG LFKKAQKLSS LTGCRIAVLV ISEAGVPYTH 60 GSPSFDDVVR DSLISTNSDS GQSSSGSDNN NDDADHSGLM NVDNIDDCKS IEEMIEANGD 120 CLDRNIDDCL SDNNCDLAAA ASIDCQIQSP NRLTRKSKEL PKDWSEQGIS KLEFATVNSG 180 TIQNMDIKDL QSDVCAQHEP ACQHLSEGSI RGNSPIEGKH LSDIDQNFAQ RYASPLEGSS 240 LSLSSRGRQS IMTPNSATYL GIISSSKHTG IVSSNEVIKA AESISSIQKS ISRFRIPNSS 300 APNSSLKEGI DKLKRRLSNY SSMPSPFTPD RTDNSTDLKS KYVSALVASS EEKLHRADLK 360 NGEYKMLVNI DNNGIETPKN TGKLAPDEAI TGLENDGEPA NYMLMDIHSK DKATKLVAGI 420 GSPSNMGLSR TKVKQDILIS EISPKRTLVT SGTRSLLLND GETKLQRHQI ESETFRIAQT 480 PSRDTTILNF QLESSEEHHK TGASPLLSVS SISGSTSEPS PLKSPSNKGS TWSSPRKVPT 540 QRSSRNSSDQ KAMRQEPTPS SPMKGPTQSP STKEPTQRSS KKEASWSPPR KEQSQSPCKR 600 ELTWSSLMNE LPQFPSIKEP AQNCPRKELM KGLSRLETSS PAQSDIVQSF VGKDIVSPHS 660 NSNVFGNDGC HQELHISHSP FVTRDLEISS QKRSIGVGFD DRNHADNIPR IQRSPDVHRN 720 GNYDSAHLLH HSDRIDSERE KTEDDRTLTN WSDFLVKFSR DTRQLLSPSI DKLNLRTISV 780 LEYTLVHLLK ARKYEIFSSE IQSQKVTGCF NIRQKRIVEA KFLLSKIAYE TAKLQLMCAK 840 HEKLLKRTQL LSSGIQECQR LQLNYIQQKS ESGRKGTPLQ SHSVNFEGEN QVVCNNISTM 900 KKEIKVLDAK IKSLSNFFHS YCKLKGEPSS TNTVTLAQDH VKTRTCGRLL RQDLQLWKVD 960 DFKSRNGHYT ILLNYQGYLS QSSSLKEGIN KLERRWSNYS SIPSPFTPDR TDNSTDLKSK 1020 YVSALVASSE EKLHRADLKN GEYKMLVNID NNGIETPKNT GKLAPDEAIT GLENDGEPAN 1080 YMLMDIHSKD KATKLVAGIG SPSNMGLSRT KVKQDILISE ISPKRTLVTS GTRSLLLNDG 1140 ETKLQRHQIE SETFRIAQTP SRDTTILNFQ LESSEEHHKT GASPLLSVSS ISGSTSEPSP 1200 LKSPSNKGST WSSPRKVPTQ RSSRNSSDQK AMRQEPTPSS PMKGPTQSPS TKEPTQRSSK 1260 KEASWSPPRK EQSQSPCKRE LTWSSLMNEL PQFPSIKEPA QNCPRKELMK GLSRLETSSP 1320 AQSDIVQSFV GKDIVSPHSN SNVFGNDGCH QELHISHSPF VTRDLEISSQ KRSIGVGFDD 1380 RNHADNIPRI QRSPDVHRNG NYDSAHLLHH SDRIDSEREK TEDDRTLTNW SDFLVKFSRD 1440 TRQLLSPSID KLNLRTISVL EYTLVHLLKA RKYEIFSSEI QSQKVTGCFN IRQKRIVEAK 1500 FLLSKIAYET AKLQLMCAKH EKLLKRTQLL SSGIQECQRL QLNYIQQKSE SGRKGTPLQS 1560 HSVNFEGENQ GVCNNISTMK KEIKVLDAKI KSLSNFFHSY CKLKGEPSST NTVTLAQDHV 1620 KTRTCGRLLR QDLQLWKVDD FKSRNGHYTI LLNYQGYLSQ RFTLKFGPAS NIVVSNELNV 1680 LNIVKNFPNM DAPVAFAFVL NPGAAKRGVS SKCLVQETQV IRSLLCNLFN VVEELQMAQI 1740 EVGNLIETTF HCPSVEQLDL QLCFVNYNSG RKVTLTLDVT CLNRGIYPSE ILPYQVQDPT 1800 GRARNSESLL VEINSAADNL EAGLLRILRL GRCIAQVMQP KST

Sequence ? help Back to Top

Protein Sequence Length: 1843 aa Download sequence Send to blast

MGLGKRKIIS MEKIENEQYR LVRFPKRRNG LFKKAQKLSS LTGCRIAVLV ISEAGVPYTH  60
GSPSFDDVVR DSLISTNSDS GQSSSGSDNN NDDADHSGLM NVDNIDDCKS IEEMIEANGD  120
CLDRNIDDCL SDNNCDLAAA ASIDCQIQSP NRLTRKSKEL PKDWSEQGIS KLEFATVNSG  180
TIQNMDIKDL QSDVCAQHEP ACQHLSEGSI RGNSPIEGKH LSDIDQNFAQ RYASPLEGSS  240
LSLSSRGRQS IMTPNSATYL GIISSSKHTG IVSSNEVIKA AESISSIQKS ISRFRIPNSS  300
APNSSLKEGI DKLKRRLSNY SSMPSPFTPD RTDNSTDLKS KYVSALVASS EEKLHRADLK  360
NGEYKMLVNI DNNGIETPKN TGKLAPDEAI TGLENDGEPA NYMLMDIHSK DKATKLVAGI  420
GSPSNMGLSR TKVKQDILIS EISPKRTLVT SGTRSLLLND GETKLQRHQI ESETFRIAQT  480
PSRDTTILNF QLESSEEHHK TGASPLLSVS SISGSTSEPS PLKSPSNKGS TWSSPRKVPT  540
QRSSRNSSDQ KAMRQEPTPS SPMKGPTQSP STKEPTQRSS KKEASWSPPR KEQSQSPCKR  600
ELTWSSLMNE LPQFPSIKEP AQNCPRKELM KGLSRLETSS PAQSDIVQSF VGKDIVSPHS  660
NSNVFGNDGC HQELHISHSP FVTRDLEISS QKRSIGVGFD DRNHADNIPR IQRSPDVHRN  720
GNYDSAHLLH HSDRIDSERE KTEDDRTLTN WSDFLVKFSR DTRQLLSPSI DKLNLRTISV  780
LEYTLVHLLK ARKYEIFSSE IQSQKVTGCF NIRQKRIVEA KFLLSKIAYE TAKLQLMCAK  840
HEKLLKRTQL LSSGIQECQR LQLNYIQQKS ESGRKGTPLQ SHSVNFEGEN QVVCNNISTM  900
KKEIKVLDAK IKSLSNFFHS YCKLKGEPSS TNTVTLAQDH VKTRTCGRLL RQDLQLWKVD  960
DFKSRNGHYT ILLNYQGYLS QSSSLKEGIN KLERRWSNYS SIPSPFTPDR TDNSTDLKSK  1020
YVSALVASSE EKLHRADLKN GEYKMLVNID NNGIETPKNT GKLAPDEAIT GLENDGEPAN  1080
YMLMDIHSKD KATKLVAGIG SPSNMGLSRT KVKQDILISE ISPKRTLVTS GTRSLLLNDG  1140
ETKLQRHQIE SETFRIAQTP SRDTTILNFQ LESSEEHHKT GASPLLSVSS ISGSTSEPSP  1200
LKSPSNKGST WSSPRKVPTQ RSSRNSSDQK AMRQEPTPSS PMKGPTQSPS TKEPTQRSSK  1260
KEASWSPPRK EQSQSPCKRE LTWSSLMNEL PQFPSIKEPA QNCPRKELMK GLSRLETSSP  1320
AQSDIVQSFV GKDIVSPHSN SNVFGNDGCH QELHISHSPF VTRDLEISSQ KRSIGVGFDD  1380
RNHADNIPRI QRSPDVHRNG NYDSAHLLHH SDRIDSEREK TEDDRTLTNW SDFLVKFSRD  1440
TRQLLSPSID KLNLRTISVL EYTLVHLLKA RKYEIFSSEI QSQKVTGCFN IRQKRIVEAK  1500
FLLSKIAYET AKLQLMCAKH EKLLKRTQLL SSGIQECQRL QLNYIQQKSE SGRKGTPLQS  1560
HSVNFEGENQ GVCNNISTMK KEIKVLDAKI KSLSNFFHSY CKLKGEPSST NTVTLAQDHV  1620
KTRTCGRLLR QDLQLWKVDD FKSRNGHYTI LLNYQGYLSQ RFTLKFGPAS NIVVSNELNV  1680
LNIVKNFPNM DAPVAFAFVL NPGAAKRGVS SKCLVQETQV IRSLLCNLFN VVEELQMAQI  1740
EVGNLIETTF HCPSVEQLDL QLCFVNYNSG RKVTLTLDVT CLNRGIYPSE ILPYQVQDPT  1800
GRARNSESLL VEINSAADNL EAGLLRILRL GRCIAQVMQP KST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	315	DKLKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880811.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928721.1	0.0	uncharacterized protein LOC107416792

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47760.1	3e-14	AGAMOUS-like 102