PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G47760.1 | ||||||||
Common Name | AGL102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21282.6 Da PI: 10.1336 | ||||||||
Description | AGAMOUS-like 102 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+++ r+ tfs+Rrngi+KKA EL LC++e+av+++s+t+ y+y AT1G47760.1 9 KFIEDSIERKATFSRRRNGIFKKADELAKLCNVEIAVLVISPTNIPYTY 57 79******************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.123 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.56E-34 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-25 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGRRKIEIKF IEDSIERKAT FSRRRNGIFK KADELAKLCN VEIAVLVISP TNIPYTYGYP 60 CFNDVVERIQ NPSASSKLRS LMKELEQIKE FQEDLRKKQQ RNLEKSNMKE NVDLKLEDLV 120 AFKAKLEAYQ AGLKRKHVEM EDLSSPSILS KNTKNKMMRT EYSSGQSKGM YEFRAFGPGF 180 LGTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-14 | 3 | 66 | 18 | 81 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-14 | 3 | 66 | 18 | 81 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G47760 | |||||
AtGenExpress | AT1G47760 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G47760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G47760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141241 | 0.0 | AY141241.1 Arabidopsis thaliana MADS-box protein AGL102 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175207.1 | 1e-133 | AGAMOUS-like 102 | ||||
TrEMBL | Q9FZF2 | 1e-132 | Q9FZF2_ARATH; AGAMOUS-like 102 | ||||
STRING | AT1G47760.1 | 1e-133 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16164 | 5 | 13 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G47760.1 |
Entrez Gene | 841187 |
iHOP | AT1G47760 |
wikigenes | AT1G47760 |