PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880584.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 318aa    MW: 36717.5 Da    PI: 8.8537
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50261561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLpk  + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s 
  XP_015880584.1  26 MLPGFRFHPTDEELVGFYLRRKVEKKAISI-ELIKQIDIYKYDPWDLPKVSTVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSV 119
                     579***************************.89***************8777899**************************************98 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_015880584.1 120 keadHHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 156
                     66655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5424189IPR003441NAC domain
PROSITE profilePS5100552.92326190IPR003441NAC domain
PfamPF023653.5E-2528156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVKKMTSNT ITSSENNKQV DQEEVMLPGF RFHPTDEELV GFYLRRKVEK KAISIELIKQ  60
IDIYKYDPWD LPKVSTVGDK EWYFFCIRGR KYRNSIRPNR VTGSGFWKAT GIDKPIYSVK  120
EADHHECIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPPNG LPTTFPNLKE TTTSQQLEAE  180
VWTICRIFKR IPSYKKYIPD WRESTTRTIS PTNSSSKTCS LESDYSEAPR RSFKESTVVQ  240
HIERKPAATT EHVGGEPNRW FVGQFNPVVQ APFTASYHPT SLWNNPNGGD DFFINGNWDE  300
LTPMVQLAVD PSQLHDCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-48181967174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880584.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880584.10.0transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK553e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P5EVY81e-138A0A2P5EVY8_TREOI; NAC domain containing protein
STRINGXP_009377103.11e-138(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-94NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]