PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29543 Da PI: 5.0699 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.3 | 2.4e-43 | 4 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL+ k+eg++ +++vi+ +diy+++PwdLp ++++ ++++fF++r++++a+g r+nr t++gyWkatg XP_015880300.1 4 LPPGFRFYPTEEELVSFYLHSKLEGTRedlnQVMDRVIPVLDIYDYNPWDLPLlsgeLCRGDPEQCFFFIERQESEARGGRPNRLTSTGYWKATG 98 79************************966643344579999***********54565444566799***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++s++++ +g+k+t+vfy grap+g+kt+W m+ey++ XP_015880300.1 99 SPNNIYSSDNRIIGVKRTMVFYIGRAPSGRKTEWKMNEYKA 139 ***************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-46 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.621 | 4 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-22 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEDLPPGFRF YPTEEELVSF YLHSKLEGTR EDLNQVMDRV IPVLDIYDYN PWDLPLLSGE 60 LCRGDPEQCF FFIERQESEA RGGRPNRLTS TGYWKATGSP NNIYSSDNRI IGVKRTMVFY 120 IGRAPSGRKT EWKMNEYKAT EGEAYSSSVT TSATTLPPLR HELSVCRVYK KSKCLRAFDR 180 RPQMKEVRYP TTQQVHSDED QVSIVSGNPA PVGEKRISSS SESSSSGEHG QLLQTEGVLP 240 MSVDNEALWY WDDQLNWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-33 | 4 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-33 | 4 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-33 | 4 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-33 | 4 | 171 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-33 | 4 | 171 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-33 | 4 | 171 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-33 | 4 | 171 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015880300.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2I4HD09 | 1e-116 | A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like | ||||
STRING | VIT_08s0007g02940.t01 | 1e-101 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-71 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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