PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 193aa MW: 21004 Da PI: 6.2979 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 49.1 | 9.9e-16 | 20 | 78 | 191 | 251 |
GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 + +L+++p EalaVn+v++lhrll++++++e+ vL+ +k ++Pk+v+vveqea+hn++ XP_015880278.1 20 PGMLDIRPadVEALAVNSVFELHRLLARPGAIEK----VLSSIKAMKPKIVTVVEQEASHNGP 78 56899998889***********************....**********************976 PP | |||||||
2 | GRAS | 123.9 | 1.8e-38 | 90 | 185 | 280 | 374 |
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ +++++lgr+i+nvvaceg er+erhetl +Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW XP_015880278.1 90 SQDLIMSEVYLGRQICNVVACEGPERFERHETLTQWRARLGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAW 184 5678899999************************************************************************************* PP GRAS 374 r 374 + XP_015880278.1 185 Q 185 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.533 | 1 | 164 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-13 | 20 | 78 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-36 | 90 | 185 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGMHVEGSHF IPTVHAWVCP GMLDIRPADV EALAVNSVFE LHRLLARPGA IEKVLSSIKA 60 MKPKIVTVVE QEASHNGPES SSTTGLAPPS QDLIMSEVYL GRQICNVVAC EGPERFERHE 120 TLTQWRARLG SAGFDPVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA 180 TSAWQLSEST QSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-16 | 19 | 184 | 192 | 377 | Protein SCARECROW |
5b3h_D | 7e-16 | 19 | 184 | 192 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928681.1 | 1e-138 | DELLA protein GAI-like | ||||
Swissprot | Q8S4W7 | 5e-87 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A059AEG8 | 1e-97 | A0A059AEG8_EUCGR; Uncharacterized protein | ||||
TrEMBL | V4ST10 | 9e-98 | V4ST10_9ROSI; Uncharacterized protein | ||||
STRING | XP_010032696.1 | 2e-98 | (Eucalyptus grandis) | ||||
STRING | XP_006430617.1 | 2e-98 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF803 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 9e-84 | GRAS family protein |