PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880125.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 451aa MW: 49955.9 Da PI: 7.3135

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_015880125.1 55 RERWTEEEHKKFIEALKMYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 99 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.28E-17	49	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.922	50	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-10	51	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-16	53	102	IPR006447	Myb domain, plants
SMART	SM00717	7.4E-14	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	55	98	IPR001005	SANT/Myb domain
CDD	cd00167	8.64E-11	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLLMDQSEGI SSHIALPSGD GISLALASVQ PKDQFSCGNE YPPKVRKQYT ITKQRERWTE 60 EEHKKFIEAL KMYGRAWRKI EEHVGTKTAV QIRSHAQKFF SKVSRDQDAN NMCSVEPIEI 120 PPPRPKRKPV HPYPRKLVHP LSKEISMAEY STKSSSPNLS NLEMENQSPN LSNLELEYQS 180 PKSVLSAMGS DTLGSSNSNT PNGSLSPVSS GAGNLLSSKE IRTSFASPTV VLEETGSTQE 240 TSAKEASTTS TTTQSLKLFG RTVLVTDSQR PSSPIVETCK SQPSNVHEEQ HVKELPSSNI 300 AVLESLAGNL QYTWSQFPQH SHMALYLMHC QNESSNLFIS TAATPPPWWS SYGDLSLGKG 360 VQKEGSWTGS NNGSENDDKC SDVDNAKEEK ELDLGFQLKS SLKSTFPGLR KSFDKCKKGF 420 VPYKRCIAEE DTKSSTIHGE EREEKRTCLC L

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLLMDQSEGI SSHIALPSGD GISLALASVQ PKDQFSCGNE YPPKVRKQYT ITKQRERWTE  60
EEHKKFIEAL KMYGRAWRKI EEHVGTKTAV QIRSHAQKFF SKVSRDQDAN NMCSVEPIEI  120
PPPRPKRKPV HPYPRKLVHP LSKEISMAEY STKSSSPNLS NLEMENQSPN LSNLELEYQS  180
PKSVLSAMGS DTLGSSNSNT PNGSLSPVSS GAGNLLSSKE IRTSFASPTV VLEETGSTQE  240
TSAKEASTTS TTTQSLKLFG RTVLVTDSQR PSSPIVETCK SQPSNVHEEQ HVKELPSSNI  300
AVLESLAGNL QYTWSQFPQH SHMALYLMHC QNESSNLFIS TAATPPPWWS SYGDLSLGKG  360
VQKEGSWTGS NNGSENDDKC SDVDNAKEEK ELDLGFQLKS SLKSTFPGLR KSFDKCKKGF  420
VPYKRCIAEE DTKSSTIHGE EREEKRTCLC L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880125.1	0.0	protein REVEILLE 1-like
TrEMBL	A0A2N9GSA3	1e-140	A0A2N9GSA3_FAGSY; Uncharacterized protein
STRING	EMJ16503	1e-134	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-58	MYB_related family protein