PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879805.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 581aa    MW: 64820.2 Da    PI: 7.9796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002491111323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F +   L  H+r H
  XP_015879805.1  91 CKICGKGFDSMRALFGHMRHH 111
                     *******************99 PP
2zf-C2H214.10.00014123144223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ C++ F +   L+ H+++H
  XP_015879805.1 123 RCKECDQEFESLRALTGHMKSH 144
                     8********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-6839No hitNo description
PROSITE profilePS5015710.6991239IPR007087Zinc finger, C2H2
SMARTSM003550.141234IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-91234IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.80189116IPR007087Zinc finger, C2H2
SMARTSM003550.1389111IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.33E-990144No hitNo description
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-491115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-591113IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.032122149IPR007087Zinc finger, C2H2
SMARTSM003550.0019122144IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-8123146IPR007087Zinc finger, C2H2
PROSITE patternPS000280124145IPR007087Zinc finger, C2H2
SuperFamilySSF576677.77E-7413435No hitNo description
PROSITE profilePS5015710.783413440IPR007087Zinc finger, C2H2
SMARTSM003550.057413435IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-5413436IPR007087Zinc finger, C2H2
PROSITE patternPS000280415435IPR007087Zinc finger, C2H2
SuperFamilySSF576677.77E-7491518No hitNo description
PROSITE profilePS501579.702496523IPR007087Zinc finger, C2H2
SMARTSM003550.43496518IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-8496518IPR007087Zinc finger, C2H2
PROSITE patternPS000280498518IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MNMMKQDQEK RHFCKLCNKS FMSGKVLGGH MRSHVAKKNS TKTEKKLNKI TMDCEGGGGA  60
FSYGLRENPK KSWKFSGSEV EEGVPGQENL CKICGKGFDS MRALFGHMRH HSGKKRKGII  120
GLRCKECDQE FESLRALTGH MKSHHAERIG VSKESTAIST SQKLFGDSQY GCENSGLIRR  180
KKRSRRLRCK VSPNSSFANN LSENSSYVTE SEQEVVEVAV TLLMLSRGVR NRDGFSSVTE  240
SSNNNSATFE AKSANLTHTL VTNGGGNYVS DDDDDEAFKM KKPRLEKLKV SEFSENDSGF  300
VSDEGKIVKL EVSIDKFYEG VAYKMPNLDD DDTENKNGSH EGMRMMNIIN RFEVELHENF  360
TEGIRLDQAG LGSLKSGLRK KARIGACFDQ LIGSPCGPSA SEIFDGYGRK NEYKCRICSK  420
IFHSHQALGG HQTIHRPAKN CHALQIDDHP ESFCNTKTFS EIEAASKVGH KSEFNGDSMV  480
EMDKITVMTS CESKEHKCPI CFKIFASGQA LGGHKRAHFA KDSEAGEEQI SLLNQELSDI  540
CDKVIGFDVR IEDEAKADVE LKSWWVKNDQ KHELLLGLIP N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879805.10.0uncharacterized protein LOC107415907
TrEMBLA0A2P5AW761e-160A0A2P5AW76_PARAD; TFIIH C1-like domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-21C2H2-like zinc finger protein