PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879213.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family E2F/DP
Protein Properties Length: 378aa    MW: 42580.1 Da    PI: 9.3404
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.95.4e-212188171
         E2F_TDP  1 rkeksLrlltqkflkllek..seegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rkeksL++l+++fl l++   + + +v l+++a++L    v  +rRR YD++N+Le+++++++k+kn+++wkg
  XP_015879213.1 21 RKEKSLGVLCSNFLGLYNGdcAGTSTVGLDDAANRL---GV--ERRRMYDVVNILESIGVVARKAKNQYTWKG 88
                    79***************974366699**********...**..****************************98 PP
2E2F_TDP66.43.8e-21148228171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +++ksL ll+q+f+kl+ +s+ +++ l+++ak+L  +       ++k+RR+YD++NV+++lnliek     + k+++rw g
  XP_015879213.1 148 KSDKSLALLSQNFIKLFLCSNVDMILLDNAAKALPGDaddetTLRTKVRRLYDVANVFSSLNLIEKirhseSGKPAYRWLG 228
                     579*******************************777*99999999***********************9999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-231990IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.47E-132086IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-242188IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.8E-192288IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-20145229IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-26148228IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.0E-16150228IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.63E-11150229IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSLVSLVYG ESETRPQFYS RKEKSLGVLC SNFLGLYNGD CAGTSTVGLD DAANRLGVER  60
RRMYDVVNIL ESIGVVARKA KNQYTWKGLE EIPRCLEQLK KDGLKENFNS AGSCSSARVS  120
NENQCGGLLS LNTGGEANHL ASLRKNNKSD KSLALLSQNF IKLFLCSNVD MILLDNAAKA  180
LPGDADDETT LRTKVRRLYD VANVFSSLNL IEKIRHSESG KPAYRWLGWK GKLKNGFDTA  240
SEINEPKKRV FGSDITNYNS KRNKTDSVVG WKSSKETSVR MHNKLVDLEH EYDENELKQH  300
PRHKSTGIDF GPFAPVSVLK ARDAAFKNVK QVQDMESLAS TYRPQYHNQA LYDLFAHYME  360
AWKSWLEATR KQQTQQIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-35202183226Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879213.10.0E2F transcription factor-like E2FF isoform X2
TrEMBLA0A2P5DRU51e-173A0A2P5DRU5_TREOI; E2F Family
STRINGXP_010091943.11e-170(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-104DP-E2F-like protein 3