PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879033.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 267aa    MW: 31363.3 Da    PI: 9.4863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024102125123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+ksF    +L +H  + H
  XP_015879033.1 102 WQCGYCKKSFYEEKYLDKHFDNrH 125
                     58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.58102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVRGSSKWVA PFFLCLLLSL HKIQGHEEST TSRTPKQELG DAVEVHCSRE RSRAAWKIIE  60
EYLMPFVDKE RYQLSRRCRL HPDNDLYRDQ EQHKIRLDIN EWQCGYCKKS FYEEKYLDKH  120
FDNRHYNLLN VSHSRCLADV CGALHCDHVM DISLKTKCNP AAAARNHLLC ESLADSCFPV  180
NEGPSASRLH EFFLRQFCDA HTCKGNQKPF SRGRKKRMNI FYLIVSILTI LLLLLFYTYM  240
YLYQRGIKRG PQKLIRVSQS GRKKKPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015879033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879033.10.0uncharacterized protein LOC107415251
TrEMBLA0A2I4E4I51e-141A0A2I4E4I5_JUGRE; uncharacterized protein LOC108986216 isoform X1
STRINGVIT_14s0219g00070.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-104C2H2-like zinc finger protein