PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015878714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 581aa MW: 65029.1 Da PI: 4.9998 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.4e-53 | 14 | 140 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+d++k+ePwdLp + +k+++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++ XP_015878714.1 14 LPLGFRFRPTDEELVDYYLRSKINGDEKQV-TVIREIDVCKWEPWDLPdlSVIKTNDPEWFFFCPQDRKYPNGHRLNRATTAGYWKATGKDRKIK 107 699************************999.99**************96447888889************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s +++l+g+kktLvfy+grapkg++t+Wvmheyr XP_015878714.1 108 S-GTTLIGMKKTLVFYTGRAPKGKRTSWVMHEYR 140 *.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-61 | 9 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.578 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-28 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MAVDELAVLS LNSLPLGFRF RPTDEELVDY YLRSKINGDE KQVTVIREID VCKWEPWDLP 60 DLSVIKTNDP EWFFFCPQDR KYPNGHRLNR ATTAGYWKAT GKDRKIKSGT TLIGMKKTLV 120 FYTGRAPKGK RTSWVMHEYR PTLKELDGTN PGQNAFVLCR LFKKQDDTIS NCDEAEIIVP 180 SPAKSSPEDP QSELVVPPAS PSGRQAENSD GTASDVVVSH EYGCDAEDQA TEEADAEHVD 240 LQLQQDLENM FYDPPLGQLD CKIFSPLHSQ MQAELGYCPV VNDSNSGKTG VQFPYGTNES 300 DEISKFLDSI LNVPEDCDNG QLNMGEIGIK AEAKAECGVA KGMFDHEYQD SWGFINKRAP 360 TSMETLEDYG VTSSLPKASA ASGNQLNDDN VTGITRRIRQ WPNPPSNENS VFRQGEAPRR 420 IRFQCKLQVG SVSCGPMARD HRIRKPEEEL KPAVKEEEKA SEQHANGMDE PEKLSLFSKC 480 RVGNSETPQE QEEKASEQHA SGMNEPEKLS LFSKCRVGNS ETSQELVTTI RPSWMSKAGK 540 KVYSALWKAP AGYSIWLFMF RVVGCVVLFT VSASLWRCLK F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 1 | 165 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 1 | 165 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 1 | 165 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 1 | 165 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-45 | 1 | 165 | 4 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 1 | 165 | 4 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015878714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878714.1 | 0.0 | NAC domain-containing protein 91-like isoform X2 | ||||
TrEMBL | A0A2P5DF84 | 1e-175 | A0A2P5DF84_PARAD; NAC domain containing protein | ||||
STRING | XP_010103069.1 | 1e-174 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 1e-102 | TCV-interacting protein |