PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015878685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 223aa MW: 26151.3 Da PI: 8.9555 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.6e-21 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +ft+eq++ Le+ Fe+n+++ +++++LA++lgL+ rqV +WFqNrRa++k XP_015878685.1 35 NNKKRFTDEQIRLLESIFESNSKLEPKKKAQLARELGLQPRQVAIWFQNRRARWK 89 56788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 4e-40 | 36 | 127 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+++eq++lLE+ Fe+++kLep++K++lareLglqprqva+WFqnrRAR+k+kq+Ek++++Lk++yd+l++ ++L++e+++L+ ++++ XP_015878685.1 36 NKKRFTDEQIRLLESIFESNSKLEPKKKAQLARELGLQPRQVAIWFQNRRARWKSKQIEKEFRKLKAEYDSLASTFDSLKDENRSLHIQVQK 127 79*************************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.9E-21 | 18 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 19.046 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-20 | 33 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-18 | 35 | 89 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-21 | 37 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.31E-17 | 39 | 92 | No hit | No description |
PRINTS | PR00031 | 1.7E-6 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-6 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-15 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEETEYSVSE NFDQFVTCLE SLPTTKNKKN KSKKNNKKRF TDEQIRLLES IFESNSKLEP 60 KKKAQLAREL GLQPRQVAIW FQNRRARWKS KQIEKEFRKL KAEYDSLAST FDSLKDENRS 120 LHIQVQKLND LLGKPQDLNS RDSKGLTENC KNMNWKGDEK CCLQERLGLD QSRGNIDSCN 180 ITRNVNAGDT REQGYELMNS NNQHVDVSLM SMENWYGFDP SRW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRARWKSKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015878685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878685.1 | 1e-164 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A314XMA3 | 7e-64 | A0A314XMA3_PRUYE; Homeobox-leucine zipper protein ATHB-12 | ||||
STRING | XP_008234673.1 | 4e-63 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-41 | homeobox 12 |