PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878058.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 336aa    MW: 37671.4 Da    PI: 8.2037
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.3e-36291202102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+ll++
  XP_015878058.1  29 FLTKTYQLVDDQTIDDVISWNDEGSTFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANEYFRRGEKRLLCE 114
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_015878058.1 115 IQRRKI 120
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-5625118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3426118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.8E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.1E-4172202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAPPPPGESN SDTTAAGGGD SQRTLPTPFL TKTYQLVDDQ TIDDVISWND EGSTFIVWDP  60
TVFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NEYFRRGEKR LLCEIQRRKI  120
TTPATAVAVP AAVAVPSGVT VAAIPTAKPI ISPTNSGEEQ VISSSSSPIR ASAELVDEND  180
RLRKENQQLK KELADMKSLC KNIFNMVSNY AYDQSESGFQ ARESGFRDVK PLDLMPGRRF  240
RGEAVEDAAV MEDETETNPR LFGVTIGMKR AREGSKGSRE DDETDLRLHQ AAEADVKSEP  300
LDAGHKETTA TKKKKKKKKA FHHISALMWN LKWQWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-232911829129Heat shock factor protein 1
5d5v_B2e-232911829129Heat shock factor protein 1
5d5v_D2e-232911829129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015878058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878058.10.0heat stress transcription factor B-2b
SwissprotQ9SCW42e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2P5BPV91e-158A0A2P5BPV9_PARAD; Heat shock transcription factor
STRINGXP_010107420.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-81heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]