PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877776.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 585aa    MW: 67133.9 Da    PI: 8.7799
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82.1e-1955141190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +YA e+GFsv+ s++k+ k ++e+++++fvC keg ++ e+ k   ++r r  +r +Ckakl v ++k gk++++ +++eH H+l+
  XP_015877776.1  55 EFYIKYAIETGFSVCSSSTKSCKSTNEVVRKKFVCFKEGVSSIEEGK---RKRCRGMKRENCKAKLAVVRSKLGKFVIIVFVKEHIHPLS 141
                     6********************9********************99877...89999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1755141IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.101468500IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4471493IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-4475502IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSVEQLEANS ACIGVEDISL LSHSKSVDDV YIPQVAENCK PKVGQEFESI DGAYEFYIKY  60
AIETGFSVCS SSTKSCKSTN EVVRKKFVCF KEGVSSIEEG KRKRCRGMKR ENCKAKLAVV  120
RSKLGKFVII VFVKEHIHPL STLQRVHLLT SHRSVSEAKK SLTLQFSAAN VPTHKQISIF  180
EFEAGGIENI GCTKKDIYNH EAKVQNELRG QDAELLKEYF LIEQKRDSCF FFKIDVDDDG  240
KLKRCFLATS MCRRSYGCFG DVVFDTTHNT NQYSMIFAPL IGVDNHGQTR FYKDFKQCIW  300
ESKCPEEFER KWVTTIEKTG LYDNDWLKSI FELRSKWVLA YVNHIVSARM SSSQRAESFH  360
AFFKKYGSKR NLLMDFILRF NRALAYQRHE EFGADHDINE KPILKSPLEM EKQMAEIYTC  420
KIFLKFQDEL WHSLLTMPQF VRENATHKTY VVESSSKEGV RRVREIAYDK HLDFASCTCK  480
KFESEGISCR HILSFLRLFG NIPLPNQYIM KKWTKEASVI VNDGLQSLLG KIDSIVSNTK  540
NGGISEKDST AHDYEALKDP STVRAKGCGR RLKRGEGEGN KCRNV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
183103RKKFVCFKEGVSSIEEGKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877776.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4URE31e-178V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428864.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1328025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.15e-41FAR1-related sequence 1