PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877686.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 296aa    MW: 33232.2 Da    PI: 7.221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20164214255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ k++g
  XP_015877686.1 164 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFKMRG 214
                     7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32163223IPR001471AP2/ERF domain
PROSITE profilePS5103224.447164222IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23164224IPR016177DNA-binding domain
PfamPF008477.4E-15164214IPR001471AP2/ERF domain
CDDcd000182.41E-32164223No hitNo description
SMARTSM003801.0E-39164228IPR001471AP2/ERF domain
PRINTSPR003677.3E-11165176IPR001471AP2/ERF domain
PRINTSPR003677.3E-11188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDGQFKRLKR SSTSDSFGDG CLCRGDLDLD AGKDSQCFDG LFPCPTEPWG DLPFQFNDSE  60
DMMVYNFLHD AVNTGWSPLD LTATAVSSVK SEPGDPFDLV PLPTVEVDPV MFAPQTLVHN  120
SFLENAYFAF NQNDIHHHHE NDVVLRKQQK CFRNANRRAN KGRHYRGVRQ RPWGKFAAEI  180
RDPAKNGARV WLGTYETAEE AALAYDRAAF KMRGSKALLN FPHRIGSGEP EPVRITAKRR  240
EVPDSVSTSR DSGSMKKRKS LAADGEAEFG RERGFNVFPR TQYPIGLPFG EQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-38161229270ATERF1
3gcc_A4e-38161229270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237258KRREVPDSVSTSRDSGSMKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877686.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927151.10.0ethylene-responsive transcription factor 2-like isoform X1
RefseqXP_024927152.10.0ethylene-responsive transcription factor 2-like isoform X2
TrEMBLA0A061G0829e-90A0A061G082_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY227731e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-50ethylene responsive element binding factor 1