PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877217.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 343aa    MW: 37366.9 Da    PI: 6.6197
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_015877217.1 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-772332IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.583239275IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16239289IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15243302No hitNo description
Gene3DG3DSA:3.30.50.109.9E-15243276IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.68E-14244293No hitNo description
PfamPF003202.4E-15245278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVGSNFIDEI DCGSFFDHID DLLDFPCEDV EAGLGPNADS NSAFPTIWPT QSDSLPGSDS  60
VFSANSASDL SAELSVPYED IVQMEWLSKF VEDSFSGGSL TINKQDDSSN KDSSSHHQFQ  120
TSSPVSVLES SSSCSGDKNV PRSPEGVAPG RRGRARSKRP RPATFNPRPA IQLISPTSSF  180
TETPQPLITP KGCSDSENFA ESRPLIKLPK QVSTEHKKKK KIKLSVPLAP MEINQNPPTQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FIPSLHSNSH  300
KKVLEMRNKS GDQMAPSVET GTTMSNTPEL IPNTNSSISL DYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877215.20.0GATA transcription factor 8-like
TrEMBLA0A2N9EQX61e-177A0A2N9EQX6_FAGSY; GATA transcription factor
STRINGXP_008233316.11e-173(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-43GATA family protein