PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877215.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 405aa    MW: 44722.4 Da    PI: 8.8857
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17307340134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_015877215.1 307 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 340
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.583301337IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16301351IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14305338IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15305364No hitNo description
CDDcd002024.90E-14306355No hitNo description
PROSITE patternPS003440307332IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15307340IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRHAVHALFI LIRQLAVTGF TKTKLYRNSF SKKEKNNNNK NSLSFSFSFP QENLFFYLKK  60
KTMVGSNFID EIDCGSFFDH IDDLLDFPCE DVEAGLGPNA DSNSAFPTIW PTQSDSLPGS  120
DSVFSANSAS DLSAELSVPY EDIVQMEWLS KFVEDSFSGG SLTINKQDDS SNKDSSSHHQ  180
FQTSSPVSVL ESSSSCSGDK NVPRSPEGVA PGRRGRARSK RPRPATFNPR PAIQLISPTS  240
SFTETPQPLI TPKGCSDSEN FAESRPLIKL PKQVSTEHKK KKKIKLSVPL APMEINQNPP  300
TQAVRKCMHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFIPSLHSN  360
SHKKVLEMRN KSGDQMAPSV ETGTTMSNTP ELIPNTNSSI SLDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877215.20.0GATA transcription factor 8-like
TrEMBLA0A2N9EQX61e-177A0A2N9EQX6_FAGSY; GATA transcription factor
STRINGEMJ194281e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-42GATA family protein