PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877124.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 363aa    MW: 41265.5 Da    PI: 5.1462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_015877124.1  90 KSILCEFFKA-GQCTKGFKCKFSHD 113
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.39488115IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003562.6158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216158196IPR000571Zinc finger, CCCH-type
PfamPF165436.3E-18215295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPPKQQSKAD MAKKQKVVED KTFGLKNKNK SKNVQKYVQN LKQAVQPKPD ATKVAAKKKK  60
EEEKAKEKEL NDLFKVAVSQ PKVPVGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DGDTMEDWDQ EKLEKVVESK TKEYNQNKPT EIVCKYFLDA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKIPVEE EIENQRAKVT TTTPMTPELF  240
LQWKKKKMEE RDAGLAAQRA ERAKNDRMSG RELFLSDASL FVDDAEAYEK YLREEPEVAE  300
RKAQDNTAVE GPSASSSAVA GSEEAPPDDD DDDDELDMDE LNELEASLSR TSIQIREPGI  360
EAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877124.10.0zinc finger CCCH domain-containing protein 11 isoform X2
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2R6R7Z00.0A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGevm.model.supercontig_2216.10.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-162C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]