PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877097.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 385aa    MW: 42183.9 Da    PI: 4.8355
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.4e-13211261155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k++g
  XP_015877097.1 211 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKYNG 261
                     89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.744106176IPR001471AP2/ERF domain
SMARTSM003803.2E-6137182IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-7141177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-9145176IPR001471AP2/ERF domain
CDDcd000182.24E-25211271No hitNo description
PfamPF008472.3E-8211261IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17211270IPR016177DNA-binding domain
PROSITE profilePS5103215.949212269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-16212269IPR001471AP2/ERF domain
SMARTSM003809.4E-30212275IPR001471AP2/ERF domain
PRINTSPR003672.2E-6213224IPR001471AP2/ERF domain
PRINTSPR003672.2E-6251271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MNMLDLNVDI TSIDSTTCDS KEKEVMEKLQ EQGLSFRTQM EDSGTSNSSV VNAEEAATPN  60
YKDDDSNSNT TSAFIFDILK KEEIDGVREE NPSPEFVVRS LFPVAGEKGV EEADFRLGLS  120
SSKPPQWLNL SFSDSSVVPA GSGQILGGFD TAFAAARAYD RAAIKFRGVD ADINFTVSDY  180
EEDIKQMKNL SKEEFVLILR RQSNGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG  240
LFDNEVEAAR AYDKAAIKYN GREAVTNFEP STYQGEIILD ANSANSEGSG GHNLDLSLGI  300
SSPSDASKGN GSLGDSHFLF NNPEMPTRVR PLIDSSASAN MGGHHVLTLT MASKQPAVSS  360
GIYPAFFMRK EPQSRGLKLF NRIDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877097.10.0floral homeotic protein APETALA 2
TrEMBLW9QLI31e-126W9QLI3_9ROSA; Floral homeotic protein APETALA 2
STRINGXP_010087870.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-80related to AP2.7