PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877078.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 138aa    MW: 16493 Da    PI: 4.8626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.96.3e-13896187
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
                    +p+G+ F+Ptd+elv++yL +k ++ +++   +i e d + + ePw++ +          +a+++++yfF+k +k++ +gkr         Wk+  
  XP_015877078.1  8 VPRGCSFRPTDDELVSYYLMNKETRCPCPDLAMILEYDFLgDKEPWEIWNlfqpcifrYWDAHHEDLYFFTKLKKSNLRGKRI-------CWKKAK 96
                    589************************9998999999865167*****6446787776555678899*****99987655543.......355444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-185135IPR003441NAC domain
PROSITE profilePS5100510.9188138IPR003441NAC domain
PfamPF023657.3E-109114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MALEGSMVPR GCSFRPTDDE LVSYYLMNKE TRCPCPDLAM ILEYDFLGDK EPWEIWNLFQ  60
PCIFRYWDAH HEDLYFFTKL KKSNLRGKRI CWKKAKKEED EEEDDGVSWI MFEYCLSGSL  120
AMINTDYVLC QIRKKFPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927672.19e-80protein CUP-SHAPED COTYLEDON 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-07NAC-like, activated by AP3/PI