PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876655.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 496aa    MW: 55149.9 Da    PI: 4.2368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.9e-31108750128
             NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k+k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd+++   ++++vg+kktLv+++grapkg +++Wvmheyrl
  XP_015876655.1  10 KLKTRDLEWYFFSVLDKKYGNGSRTNRATEKGYWKTTGKDRPISY-NSRNVGMKKTLVYHSGRAPKGARSNWVMHEYRL 87 
                     5667888*************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.3931110IPR003441NAC domain
SuperFamilySSF1019411.09E-3710109IPR003441NAC domain
PfamPF023652.4E-141787IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
FGLWILGQSK LKTRDLEWYF FSVLDKKYGN GSRTNRATEK GYWKTTGKDR PISYNSRNVG  60
MKKTLVYHSG RAPKGARSNW VMHEYRLVDE ELEKAGIAQD AYVLCRIFQR AGQDKSGTGP  120
KNGEQYGAPF IEEEWEDDEL TWVPGEEAPI DEVQVSNGEY VEPNMVDQNL DAGIPSENAP  180
VPLNFYYADT SNNVEHSGDF VQDDVKPIIG TGETSQVGGE QVFFDLPQQY GMGAEPVKDE  240
YPVDINYSNN EPYLDASEAP SFGDDFYIET NDLTKPIDSE DFDMLDEYLT FFDVDDDNTQ  300
YLTIDSSANV GIENNVSESD PNGQKLVNGE TEFLASGSQH LLEANDSSEA SSSKQKPEAT  360
EFEPDMKSSF IKRASHMLGS IPAPPAFASE FPTKEAALQL NSAAQSSSSV HMIRIRNMTL  420
DGSGMDLSFG KNEDVNLVLS FGVSHADANS ITLVPVARLL YGKTGSTFTR GCFFFLFIWV  480
LILSVSFKIG SHFYTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-29111057165NO APICAL MERISTEM PROTEIN
1ut4_B3e-29111057165NO APICAL MERISTEM PROTEIN
1ut7_A3e-29111057165NO APICAL MERISTEM PROTEIN
1ut7_B3e-29111057165NO APICAL MERISTEM PROTEIN
3swm_A3e-29111060168NAC domain-containing protein 19
3swm_B3e-29111060168NAC domain-containing protein 19
3swm_C3e-29111060168NAC domain-containing protein 19
3swm_D3e-29111060168NAC domain-containing protein 19
3swp_A3e-29111060168NAC domain-containing protein 19
3swp_B3e-29111060168NAC domain-containing protein 19
3swp_C3e-29111060168NAC domain-containing protein 19
3swp_D3e-29111060168NAC domain-containing protein 19
4dul_A3e-29111057165NAC domain-containing protein 19
4dul_B3e-29111057165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876655.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876655.20.0LOW QUALITY PROTEIN: NAC domain-containing protein 78
SwissprotQ84K001e-127NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2P5FLD20.0A0A2P5FLD2_TREOI; NAC domain containing protein
STRINGEMJ200710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-124NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]