PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015876190.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 857aa MW: 97112.3 Da PI: 6.3795

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015876190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.7e-17	64	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA++vGFs+ + + ++sk +g i+ +f Cs+e +r+++ ++ C+a l++++++++ w+vtk+++eHnH+++ XP_015876190.1 64 FYDGYARRVGFSTHVGQFSRSKPDGPIVAWDFACSREVFRRKNVES--------------CNAVLRIERKDSNSWVVTKFVEEHNHSMV 138 9**************************************99887..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-14	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	270	362	IPR018289	MULE transposase domain
Pfam	PF04434	3.6E-12	535	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.338	547	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MDIQVVDGEG GNSEHHVEES ILLDKSEKQN ESSTGRDVIS QDDDGDATPH VGMEFDTEDA 60 AKTFYDGYAR RVGFSTHVGQ FSRSKPDGPI VAWDFACSRE VFRRKNVESC NAVLRIERKD 120 SNSWVVTKFV EEHNHSMVSP SKVHYLRPRR HFAGATKNVA DTLDATGEIY VSLDGNNVSY 180 EPNHGVRSVS PADTNRQARN VGLVNYIRPS TRKRTLGRDA QNLLNYFKKM QAENPGFYYA 240 IQLDDENRMT NVFWADARSR TAYNYFGDAV IFDTMYRPNQ FQVPFAPFTG INHHGQMVLF 300 GCALLLDESE SSFTWLFRTW LSAMNDRHPV SITTDQDRAI QAAVAHVFPE TRHCICKWHI 360 LREGQERLAH IYLAHPSFYG ELYSCINFSE TIEDFESSWA SLLDRYDLHR NEWLLAVYNA 420 RKQWAPVYFR GTFFASLSSN QGISSFFDGY VNQQTTIPLF FKQYEVALEH SLEKEIEADY 480 DTICTTPVLK TPSPMEQQAA NLYTKKVFSK FQDELVETFV YTANKIEGDG VVSKYRVAKY 540 EQDDKAYMVT LNVSEMKANC SCQMFEYSGI LCRHILTVFT VTNVLTLPSH YILKRWTRNA 600 KYAVGLDEPN SDPQGVENLT MRFNNLCQEA IKYAEEGAIA VETYNAAMSA LRESGKKIAV 660 MKKNVAKVTP PSSQGSGNSQ EDINKKASLP LSEMVPSLWP WQDAMPHRFN LNDVGVPVAD 720 LNQPMMAPVS IHHDSGPSDN TVVLTCFKSM TWVIENKNSN PAGKVAVINL KLQDYGKNPS 780 GETEVQFRLT RITLEPMLRS MAYISQQLSA PANRVAVINL KLQDTKTATG ETEVKFQVSR 840 DTLGSMLRSM AYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MDIQVVDGEG GNSEHHVEES ILLDKSEKQN ESSTGRDVIS QDDDGDATPH VGMEFDTEDA  60
AKTFYDGYAR RVGFSTHVGQ FSRSKPDGPI VAWDFACSRE VFRRKNVESC NAVLRIERKD  120
SNSWVVTKFV EEHNHSMVSP SKVHYLRPRR HFAGATKNVA DTLDATGEIY VSLDGNNVSY  180
EPNHGVRSVS PADTNRQARN VGLVNYIRPS TRKRTLGRDA QNLLNYFKKM QAENPGFYYA  240
IQLDDENRMT NVFWADARSR TAYNYFGDAV IFDTMYRPNQ FQVPFAPFTG INHHGQMVLF  300
GCALLLDESE SSFTWLFRTW LSAMNDRHPV SITTDQDRAI QAAVAHVFPE TRHCICKWHI  360
LREGQERLAH IYLAHPSFYG ELYSCINFSE TIEDFESSWA SLLDRYDLHR NEWLLAVYNA  420
RKQWAPVYFR GTFFASLSSN QGISSFFDGY VNQQTTIPLF FKQYEVALEH SLEKEIEADY  480
DTICTTPVLK TPSPMEQQAA NLYTKKVFSK FQDELVETFV YTANKIEGDG VVSKYRVAKY  540
EQDDKAYMVT LNVSEMKANC SCQMFEYSGI LCRHILTVFT VTNVLTLPSH YILKRWTRNA  600
KYAVGLDEPN SDPQGVENLT MRFNNLCQEA IKYAEEGAIA VETYNAAMSA LRESGKKIAV  660
MKKNVAKVTP PSSQGSGNSQ EDINKKASLP LSEMVPSLWP WQDAMPHRFN LNDVGVPVAD  720
LNQPMMAPVS IHHDSGPSDN TVVLTCFKSM TWVIENKNSN PAGKVAVINL KLQDYGKNPS  780
GETEVQFRLT RITLEPMLRS MAYISQQLSA PANRVAVINL KLQDTKTATG ETEVKFQVSR  840
DTLGSMLRSM AYIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015876190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876191.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_024927403.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	M5X6W3	0.0	M5X6W3_PRUPE; Uncharacterized protein
STRING	EMJ21797	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]