PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875928.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 412aa    MW: 45703.7 Da    PI: 6.9379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12346391655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + +++L +AveYIk+Lq
  XP_015875928.1 346 SIAERVRRTRISERMRKLQELVPSM----DKQTNTSDMLDLAVEYIKDLQ 391
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16343403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-12344395No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15345402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9346391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MESDLQHHHL FRDHLQQQQQ MNSGLMRYRS APSSYFTSAM DREFCQQFFD RPSSPETERI  60
FACFMNGGNG GDDTGNKVTG TETDQKTQFS TSTMNNETGV LEQQQQSNLN DYSSASQNFY  120
QPSSKPPLPN QSLPSGNEGS NYSVGMNQIP QMRTGSVNNS NLIRHSSSPA GLFASINIDN  180
GYRRVMGDYG VTNTNSTKEE AAISSANRLK NYNTAGGPPP LPSAGLMSPI AEMEDKNLAI  240
TNPDTGNYVT AGLPMPSWDD SASMSDSITG LKRLRSLDDT KPFSALNKSE NQNVEVGARP  300
PTLLTHHLSL PKTSSEMAAI EKYLQFQDSV PCKIRAKRGC ATHPRSIAER VRRTRISERM  360
RKLQELVPSM DKQTNTSDML DLAVEYIKDL QEQVQTLSDK RAKCTCSNRV EQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867132.10.0transcription factor bHLH122-like
RefseqXP_015875928.10.0transcription factor bHLH122-like isoform X1
TrEMBLA0A2P5D8Z81e-178A0A2P5D8Z8_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_008219331.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-70bHLH family protein