PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875822.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 342aa    MW: 39262.6 Da    PI: 6.1692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004579101323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F +   L++H   H
  XP_015875822.1  79 CSyeGCGKTFIDAGALRKHSHIH 101
                     77779**************7766 PP
2zf-C2H222.33.4e-07106130123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk Fs   nL++H++tH
  XP_015875822.1 106 YVCHyeGCGKAFSLDFNLRSHMKTH 130
                     9***********************9 PP
3zf-C2H217.71e-05136160123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp  dCgk++ + + Lk+Hi++H
  XP_015875822.1 136 HICPypDCGKRYAHEYKLKNHISSH 160
                     679999******************6 PP
4zf-C2H2140.00015200225123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   C k + + + Lk H+r+ H
  XP_015875822.1 200 YACPyeGCEKAYIHEYKLKLHLRReH 225
                     89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-1472102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-980130No hitNo description
Gene3DG3DSA:3.30.160.609.7E-14103129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.2E-4106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.778106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-8116162No hitNo description
Gene3DG3DSA:3.30.160.601.9E-8130162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0045136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-5195223No hitNo description
Gene3DG3DSA:3.30.160.603.3E-9195223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0089200225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972200230IPR007087Zinc finger, C2H2
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
METHYSHNFF ERRPIIKSKT PAVKWYREWV PQDVVATGGK CLLLKWVTED ALKALKEKAK  60
EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKAFSLD  120
FNLRSHMKTH SQENYHICPY PDCGKRYAHE YKLKNHISSH HEKSAAVDVP KYAPPSEKQT  180
KTTKSPATGV YGSASSDRPY ACPYEGCEKA YIHEYKLKLH LRREHPGHMS DENAENIQTN  240
PDNEMDEASD QDAYGGKRVN GKSQKQIKPK PNLKMPPSKI AQRKGSTPSP ATVNVMKKPW  300
PVKEEIYEED SEETEEDRDN VEDGWRYAEN NEEDDEETEY ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-20792218117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875822.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865754.10.0zinc finger transcription factor YY1-like
RefseqXP_015875821.10.0zinc finger transcription factor YY1-like
SwissprotQ2V3L31e-137YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A251RJN10.0A0A251RJN1_PRUPE; Uncharacterized protein
STRINGXP_008218753.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]