PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875499.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GeBP

Protein Properties

Length: 420aa MW: 46193 Da PI: 4.6606

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.9	5.7e-37	135	233	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 lfqrlw++eDei lLqG++d+++++gk + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+s+ XP_015875499.1 135 LFQRLWTDEDEIELLQGFLDYTSQRGKtthHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEISR 229 79***********************5433345********************************************************* PP DUF573 94 kiWg 97 kiW XP_015875499.1 230 KIWS 233 *6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.8E-35	136	233	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MASHHDDAVL PEEDLDSSSQ DDEEDDVVDD DEDDDDVINS ASPSTSSAGA DSLPVSLPLT 60 TATSTATTTT TSTTSVVTVA LPSLPNGEPP PTLATTVIAN LSDPTRHRII DHGNDATLAL 120 QPEEKKPALD DSRRLFQRLW TDEDEIELLQ GFLDYTSQRG KTTHHGQNDT ALFYDQIKSK 180 LQLDFNKNQL VEKLRRLKKK YRNVLNKISS GKEFSFKSPH DQATFEISRK IWSNLGRIGA 240 EDNALDDDDP NPNPNNPNSF NMELKSEDTG AFFAEKKTPR SRKRSRPQTT ALRTADEKRG 300 FIDNSASKDI TNNSGGNSKI SGNNSVQGMI EESLKSCLSP LLKELLSNAI GGPCGSRGFG 360 LALNPMPLTF GGPSMNFGSE VVDEKWRKQQ ILELEVYSKR LELVQDQIKS ALEELRSKGG

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MASHHDDAVL PEEDLDSSSQ DDEEDDVVDD DEDDDDVINS ASPSTSSAGA DSLPVSLPLT  60
TATSTATTTT TSTTSVVTVA LPSLPNGEPP PTLATTVIAN LSDPTRHRII DHGNDATLAL  120
QPEEKKPALD DSRRLFQRLW TDEDEIELLQ GFLDYTSQRG KTTHHGQNDT ALFYDQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVLNKISS GKEFSFKSPH DQATFEISRK IWSNLGRIGA  240
EDNALDDDDP NPNPNNPNSF NMELKSEDTG AFFAEKKTPR SRKRSRPQTT ALRTADEKRG  300
FIDNSASKDI TNNSGGNSKI SGNNSVQGMI EESLKSCLSP LLKELLSNAI GGPCGSRGFG  360
LALNPMPLTF GGPSMNFGSE VVDEKWRKQQ ILELEVYSKR LELVQDQIKS ALEELRSKGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875499.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875499.1	0.0	probable transcription factor At3g04930
Refseq	XP_024926809.1	0.0	probable transcription factor At3g04930
Refseq	XP_024926811.1	0.0	probable transcription factor At3g04930
Swissprot	F4K5T4	2e-86	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A2P5DKS4	1e-168	A0A2P5DKS4_PARAD; DNA-binding storekeeper protein-related transcriptional regulator
STRING	XP_010090273.1	1e-154	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	6e-58	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]