PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARF | ||||||||
Protein Properties | Length: 747aa MW: 81778.3 Da PI: 7.1249 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.5e-24 | 158 | 259 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_015875203.1 158 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDD 249 99****************************963.3445679************************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_015875203.1 250 GELRLGIRRA 259 999****996 PP | |||||||
2 | Auxin_resp | 122 | 4.3e-40 | 284 | 365 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++s F+++YnPras+s+F+v+++k++k+l++++svGmRfkm+feted++err++G+v+g+ d+dpvrWp+SkWr+L XP_015875203.1 284 VVNAISSRSSFSIYYNPRASSSDFIVPLRKFLKSLDRSFSVGMRFKMRFETEDAAERRYTGLVTGIGDMDPVRWPGSKWRCL 365 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-40 | 149 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.01E-42 | 152 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.19E-22 | 156 | 258 | No hit | No description |
Pfam | PF02362 | 1.3E-22 | 158 | 259 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-22 | 158 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.296 | 158 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-35 | 285 | 365 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MAGLIDLNTT EDDETPSSGS SASSSSVSIL SASGSASTPA GASGFASSSV CLELWHACAG 60 PLISLPRKGS VVVYLPQGHL EQVSDFPAAA YELPPHLFCR VVDVKLHAEE GTDEVYAQVS 120 LVPETEQIEQ KLRDRDVDED GEEEDIEAAA KSTTPHMFCK TLTASDTSTH GGFSVPRRAA 180 EDCFPSLDYK QQRPSQELVA KDLHGLEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD 240 AVLFLRGDDG ELRLGIRRAA QVKDCSTFPT LYSQQLNYSS LTDVVNAISS RSSFSIYYNP 300 RASSSDFIVP LRKFLKSLDR SFSVGMRFKM RFETEDAAER RYTGLVTGIG DMDPVRWPGS 360 KWRCLVVRWD DVDTNRHGRV SPWEIEPSGS APSSASFMAP GLKRTRIGLS SAKPEFPVPN 420 GIGASDFGES LRFQKVLQGQ EIMGFDTPFD GIGTQNLHPS ETRRGYPGSN SSGIAAIGNI 480 VRNPHMISDN ITPKGIGFGE SFRFHKVLQG QEIHSSSPCG RVPTTNEANQ YGGLGIYDGV 540 QVPNSRNGWS TLMQSNNAHV RPSAQSVQVS SPSSVLMFQH AMNPVSNFNS MYNGHNQEDQ 600 RNIKRSLYMP ESNSGKHTSS FCNRIFSGED HGGRKSLHSL TDHIQQGISN PHVAQTTHRS 660 TQDVVVSCKS SCRLFGFSLT EEKRVPDKEC NSTPATSPLN AGASLFPNVG GQFHSKPPLM 720 AKAVGSNCTK ELAFDWCGDR MEYCLQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-115 | 30 | 390 | 1 | 357 | Auxin response factor 1 |
4ldy_B | 1e-115 | 30 | 390 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875203.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875203.1 | 0.0 | auxin response factor 3 | ||||
Refseq | XP_015875211.1 | 0.0 | auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2P5CHY9 | 0.0 | A0A2P5CHY9_TREOI; Auxin response factor | ||||
STRING | XP_010111164.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |