PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874696.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 540aa    MW: 60414.1 Da    PI: 6.2904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12490536346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      +W+  E+e l d+vk++G+g+Wk+I ++     + Rt+ ++k++w++
   XP_015874696.1 490 KWSLVEEETLRDGVKKFGKGNWKLILNCYRdvfEERTEVDLKDKWRN 536
                      8********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.162483540IPR017930Myb domain
SMARTSM007172.7E-8487540IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-14490539IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-11490538IPR009057Homeodomain-like
PfamPF002491.2E-9490536IPR001005SANT/Myb domain
CDDcd116604.12E-18491539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDVDVSRWIL EFLLRKCDDD GVVKKALKVI PFPNDESRLK KVVLLRAIES EVSEASVSEK  60
ILENLEMLEE LDQREGTDTL DSMKAAYCAV ALECTAKYLS ASKPGKYFEA VRRIWRGRVS  120
HMERSGKSRL LTEELKKNGE EVEAAIWDAN VSKKLCRMNT RNEALGLLSV YLGEAWALMG  180
PSFIEWAARL SIKDKGVDGS GVEEGIGDGV DRDRGDVDNG GNAKDGGHEV GAQSNVGVEV  240
PEQVVVDSPE RCAESGLNGL LELAVQFENR VDGNGNVSDH NPAAKKEVTT PKDKETRKEN  300
VGLRCKHVAA HRRHRGPARI TNGGDLDPEA LCNKDDSLSS ADINKARQSL KSSRMELLAV  360
VTDPLPEAIQ RSEIIISNLA TKNVNHEPSL QNEGRKDLDE SNSSVDKNAE TIQPSDINVG  420
DPSCSHQKNN VPRPTLMERN STAQTYEWDD SIDGSPERNR LHLPSPKRKI SSPLQKYEMT  480
KIAKRRKIKK WSLVEEETLR DGVKKFGKGN WKLILNCYRD VFEERTEVDL KDKWRNMSRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466486KRKISSPLQKYEMTKIAKRRK
2466489KRKISSPLQKYEMTKIAKRRKIKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874696.10.0uncharacterized protein LOC107411598 isoform X2
TrEMBLA0A2P5AM891e-176A0A2P5AM89_PARAD; GAMYB transcription factor
TrEMBLA0A2P5CYN71e-176A0A2P5CYN7_TREOI; GAMYB transcription factor
STRINGXP_010108474.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.13e-15TRF-like 7