PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G06910.1 | ||||||||
Common Name | TRFL7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 390aa MW: 44344.3 Da PI: 5.0126 | ||||||||
Description | TRF-like 7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 335 | 380 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 +++W+t E + +++ +++G + Wk+I + + +Rt ++k++++ AT1G06910.1 335 KLPWSTAETLAVLKGYEKYGAN-WKRIKDENPvlVRRTNGDIKDKFR 380 689*****************99.**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-8 | 327 | 385 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.64 | 330 | 387 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.79E-7 | 332 | 382 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-4 | 334 | 385 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.22E-11 | 337 | 379 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MALSQWKEAI LEGIFMEIED GIVEEKNLER LENLVEILHK EGSKVPKSVT EAYCKVAVEC 60 TVKCLAYEKD AKKAYTEAIK TIWLGRIMPL CDKVSCLVTL DLLKCCRRLW KAHTDDKACK 120 TLMDEDTRDK ALVCLRKVVL DLNPNLVLEN LNMDESDEIE SSEESEETES MVEAREGVGN 180 QNSQASEAME EDDQESLLDT ELERPTSGGS KAVYVPSQFN PIPSAVVDRA LRKLRASKIE 240 LMKALEKGRP SNLNNETITE QENDVANPSA TNAAPRPSLM EPRSTAHTYE WNDSIDDSDG 300 EMGDDIERIN KSKRKRIVVS PLKRNRCSEG ARRPKLPWST AETLAVLKGY EKYGANWKRI 360 KDENPVLVRR TNGDIKDKFR VEMRREERRH |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145361225 | 0.0 | ||||
Expression Atlas | AT1G06910 | - | ||||
AtGenExpress | AT1G06910 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Arabidopsis thaliana myb family transcription factor (At1g06910) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G06910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | jasmonic acid, salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G06910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519534 | 0.0 | AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_683280.1 | 0.0 | TRF-like 7 | ||||
TrEMBL | A0A178W486 | 0.0 | A0A178W486_ARATH; TRFL7 | ||||
TrEMBL | Q6R0E4 | 0.0 | Q6R0E4_ARATH; MYB transcription factor | ||||
STRING | AT1G06910.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14910 | 11 | 11 | Representative plant | OGRP1503 | 14 | 24 |
Link Out ? help Back to Top | |
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Phytozome | AT1G06910.1 |
Entrez Gene | 837201 |
iHOP | AT1G06910 |
wikigenes | AT1G06910 |
Publications ? help Back to Top | |||
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