PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874690.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 306aa    MW: 34333.4 Da    PI: 7.8302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21156206155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +grW+AeIrdp   ++rkr++lg+f+taeeAa  +++a+ kl+g
  XP_015874690.1 156 KKFRGVRRRP-WGRWAAEIRDP---NRRKRVWLGTFDTAEEAATVYDKAAVKLKG 206
                     59********.**********8...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-34156216No hitNo description
PROSITE profilePS5103224.737157214IPR001471AP2/ERF domain
SMARTSM003801.1E-37157220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-31157215IPR001471AP2/ERF domain
PfamPF008471.7E-13157206IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23157215IPR016177DNA-binding domain
PRINTSPR003672.3E-10158169IPR001471AP2/ERF domain
PRINTSPR003672.3E-10180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSLPSHHPDT HDQSHLQPFD RLSSARRSMV TSCTDTDSPT NSGMVKYSEH VTTMNKLVLQ  60
DRKPIASGDH NSFKTTKTVQ QKVVRIIHTD ADATDSSSDD EEERSIRRVK RHVREINMEL  120
SSSSSTTPVK TPPAKLNQPP TKRPPKLPES DSSRRKKFRG VRRRPWGRWA AEIRDPNRRK  180
RVWLGTFDTA EEAATVYDKA AVKLKGPNAV TNFPNAVMTE ETVVIDSPPE ESPSRVASGS  240
ASSPTSVLRY DEPSLFNGFG YLDADAFGFD IDAPLSFPDI MLSRKTMAEL EFSEFDFKDF  300
SVDVVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201572151473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153163RRKKFRGVRRR
2161180RRRPWGRWAAEIRDPNRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874690.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2N9J1Q06e-93A0A2N9J1Q0_FAGSY; Uncharacterized protein
STRINGXP_008240070.12e-90(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-24cytokinin response factor 4