PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874527.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 398aa    MW: 45938.5 Da    PI: 6.5462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.27e-45561822128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+rF+Ptd+elv ++L++kv++ kl+ + + +ev++yk++P+ L ++++a +e+ewy F++rd+ky++g+r+nra+ +gyWkatg dk+v+  
  XP_015874527.1  56 PVGYRFRPTDQELVGYHLRRKVANYKLPKNMTANEVELYKYNPEYLAENYEAqGENEWYLFTPRDRKYPNGERPNRAAGDGYWKATGADKPVVY- 149
                     89************************999777**************9544442677**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g ++g kk+Lvfy+g+ p g+kt+W+mheyrl
  XP_015874527.1 150 NGFKIGFKKSLVFYQGKPPGGVKTNWIMHEYRL 182
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-5252208IPR003441NAC domain
PROSITE profilePS5100551.93355208IPR003441NAC domain
PfamPF023652.1E-2456182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDVQQIVESP KSQSPINKAS SVYLSSVNAS SPTNINGSNL HDHDCHYFEE SVSEYPVGYR  60
FRPTDQELVG YHLRRKVANY KLPKNMTANE VELYKYNPEY LAENYEAQGE NEWYLFTPRD  120
RKYPNGERPN RAAGDGYWKA TGADKPVVYN GFKIGFKKSL VFYQGKPPGG VKTNWIMHEY  180
RLNQPPKKKA SDSDMRLDDW VLCKLYNKKK TIKNPLTNKK RKLQDARDFE IVEEDGHEVP  240
VNKSGIDHQT SVSTINNIDD SSTSQNRHVN DHNHMSAYDP RNHMSAYDAN NHMSAYDPHN  300
HMSAYDANNH MSAYDPHNHM SAYDANNHMS AYDPHNHTSA YDPNNHVSAY DPHRDPFMED  360
YGVENQHDDA YYLSNLINVI PPPPNIEQLW FMKKDEGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-565020910169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207221KKKTIKNPLTNKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874527.10.0NAC transcription factor 29-like
TrEMBLR4N7R62e-68R4N7R6_JATCU; NAC transcription factor 057
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-60NAC-like, activated by AP3/PI