PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874525.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 496aa    MW: 56260.5 Da    PI: 9.2382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08278308435
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgR 35 
                      WT+eE++l+++ +k+ G++ W+t a  +gk+R
   XP_015874525.1 278 WTAEEHQLILNFHKENGSK-WRTLADALGKNR 308
                      *******************.*********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011201272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-5202254IPR009057Homeodomain-like
PROSITE profilePS500905.39202270IPR017877Myb-like domain
SuperFamilySSF466894.7E-7245305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-7255311IPR009057Homeodomain-like
SMARTSM007172.3274390IPR001005SANT/Myb domain
PROSITE profilePS500906.086278308IPR017877Myb-like domain
PfamPF139212.0E-6278336No hitNo description
PROSITE profilePS500906.609320388IPR017877Myb-like domain
PROSITE profilePS500904.693409456IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MRKRPFEISA QLINGGENCC ECADIAEVNN EEEVGAKKKK KKKRKREKLG GDVVASLTSD  60
GIESLRSDKK KRRRYQETKL GVGLLQAVTE KPDSENTRTR GGTNVGNEGN VGAVGDEICH  120
SSRDAVNVED GFQVKKVKSD KHCSKDKKKN AKRDKQVSDG NVGPSDTFEN PPPERASKRV  180
RVSDNVDVFS STNALNDGID FRGKWFSPEE DKIIEAISKY IVKHSLGANG KDMILSCKEH  240
PELRRCWKEI AAALPWRTST SVYFRAHTVC NRAEERIWTA EEHQLILNFH KENGSKWRTL  300
ADALGKNRIH NKDAFRRNKL PNLKKGRWFQ RVYQTLLDLV NMELRMRAFE ERKIKHGMLR  360
EAISWEVISE KLSARSHCSC ATKWYDQLTS PMSGPAKKKG PKPPMGPYGI XSDTDDYCLI  420
DALLSLDASC IEDVDWDSLL ELRCGGLCXE RWKQMIKRIG DLVNKSFADQ VEVLSKRYCL  480
DVLEAREVYD SKTIVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13745KKKKKKRKR
23947KKKKRKREK
34148KKRKREKL
46873KKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874525.10.0LOW QUALITY PROTEIN: cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A314Z0131e-126A0A314Z013_PRUYE; RNA polymerase I termination factor-like
TrEMBLM5WJS61e-126M5WJS6_PRUPE; Uncharacterized protein
STRINGXP_008236762.11e-128(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-91MYB_related family protein