PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015874390.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NAC

Protein Properties

Length: 182aa MW: 20885.9 Da PI: 9.1674

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015874390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.3	1.6e-49	12	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p+GfrFhP+deel+v+yL++kv++++l++ +vi+e+d+y+++Pw+Lp+ k+ +e+ewyfFs+rd+ky++g r+nra+ gyWkatg dk++l XP_015874390.1 12 PAGFRFHPSDEELIVYYLQNKVTSRPLPA-SVIAEIDLYRYNPWELPSlsnKALFGEDEWYFFSPRDRKYPNGVRPNRAAGLGYWKATGIDKPIL 105 89*************************.99***********53334344899********************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g+kk Lvfy gr pkgektdW+m+eyrl XP_015874390.1 106 TSsGAKPIGVKKALVFYIGRPPKGEKTDWMMDEYRL 141 9866778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-56	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	55.372	11	164	IPR003441	NAC domain
Pfam	PF02365	3.7E-25	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEEELSSVFK FPAGFRFHPS DEELIVYYLQ NKVTSRPLPA SVIAEIDLYR YNPWELPSLS 60 NKALFGEDEW YFFSPRDRKY PNGVRPNRAA GLGYWKATGI DKPILTSSGA KPIGVKKALV 120 FYIGRPPKGE KTDWMMDEYR LPDSSIKPSR FKGSMRMICK AMEEENYWKI DTNNPSLILG 180 SG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-58	7	166	13	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-58	7	166	13	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-58	7	166	13	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-58	7	166	13	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-58	7	166	16	170	NAC domain-containing protein 19
3swm_B	5e-58	7	166	16	170	NAC domain-containing protein 19
3swm_C	5e-58	7	166	16	170	NAC domain-containing protein 19
3swm_D	5e-58	7	166	16	170	NAC domain-containing protein 19
3swp_A	5e-58	7	166	16	170	NAC domain-containing protein 19
3swp_B	5e-58	7	166	16	170	NAC domain-containing protein 19
3swp_C	5e-58	7	166	16	170	NAC domain-containing protein 19
3swp_D	5e-58	7	166	16	170	NAC domain-containing protein 19
4dul_A	4e-58	7	166	13	167	NAC domain-containing protein 19
4dul_B	4e-58	7	166	13	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015874390.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015874383.1	1e-112	NAC transcription factor 32-like isoform X1
Refseq	XP_015874389.1	1e-112	NAC transcription factor 32-like isoform X1
Swissprot	K4BNG7	1e-67	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A061GT65	9e-84	A0A061GT65_THECC; NAC domain containing protein 25, putative
STRING	EOY33050	2e-84	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	8e-69	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]