PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874327.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 329aa    MW: 36314.7 Da    PI: 6.785
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.75e-0710402055
             AP2 20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    rd      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_015874327.1 10 RD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 40
                    55......45************************997 PP
2AP2422.4e-1383133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_015874327.1  83 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 133
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.232148IPR001471AP2/ERF domain
SMARTSM003804.0E-13854IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-91149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-111349IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1783142IPR016177DNA-binding domain
CDDcd000181.08E-2683143No hitNo description
PfamPF008477.3E-983133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-1684141IPR001471AP2/ERF domain
PROSITE profilePS5103215.52784141IPR001471AP2/ERF domain
SMARTSM003802.5E-3284147IPR001471AP2/ERF domain
PRINTSPR003672.7E-68596IPR001471AP2/ERF domain
PRINTSPR003672.7E-6123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
FFFLGLFWCR DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFNLS DYEDDLKQMK  60
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA  120
ARAYDKAAIK CNGREAVTNF EPSTYEGEMI SEASIEGDTH NLDLNLGMST PSFGNAQMES  180
ERHLQFHAGP NDLQSGKFSK IENHADATLA DPPFKGLVMA SEQPLLLNGV YPNFFPNEER  240
ATEKRIALDS SQGLPNWAWQ MHGQVSATQM PLFSTAASSG FSFSAVPPSA AVLPSKPSNP  300
TAINLCFSSS AAHSSSQYCY QAKPPQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874327.10.0floral homeotic protein APETALA 2, partial
SwissprotB8AXC37e-94AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2N9IT540.0A0A2N9IT54_FAGSY; Uncharacterized protein
TrEMBLA0A2P5CMZ20.0A0A2P5CMZ2_PARAD; AP2/ERF transcription factor
STRINGXP_010112330.11e-174(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-92related to AP2.7